miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13115 3' -55.6 NC_003401.1 + 78528 0.66 0.916259
Target:  5'- cCGCCuggCGGAGGCGgCGAaccugGCGGGAg- -3'
miRNA:   3'- aGCGGug-GUCUUCGC-GUU-----UGCCCUgc -5'
13115 3' -55.6 NC_003401.1 + 132804 0.66 0.916259
Target:  5'- -gGCCccccucCCGGcGGCGCGGAgaccaccuuuCGGGGCGg -3'
miRNA:   3'- agCGGu-----GGUCuUCGCGUUU----------GCCCUGC- -5'
13115 3' -55.6 NC_003401.1 + 123818 0.66 0.910314
Target:  5'- uUCGCU-CUGGGAGgGCGAGC-GGACa -3'
miRNA:   3'- -AGCGGuGGUCUUCgCGUUUGcCCUGc -5'
13115 3' -55.6 NC_003401.1 + 99000 0.66 0.910314
Target:  5'- aCGCCaggGCCAGcGAGCGUcuGauaGGGGCu -3'
miRNA:   3'- aGCGG---UGGUC-UUCGCGuuUg--CCCUGc -5'
13115 3' -55.6 NC_003401.1 + 74766 0.66 0.910314
Target:  5'- cUGCCcCCGGGAGUGgAuAUGGGAg- -3'
miRNA:   3'- aGCGGuGGUCUUCGCgUuUGCCCUgc -5'
13115 3' -55.6 NC_003401.1 + 73874 0.66 0.904129
Target:  5'- gUCGCCAguCCAG-AGCGCcccacgauuAGUGGGACu -3'
miRNA:   3'- -AGCGGU--GGUCuUCGCGu--------UUGCCCUGc -5'
13115 3' -55.6 NC_003401.1 + 117799 0.66 0.904129
Target:  5'- aUGCgCACCAuGGGUGCGAugGGcaccGGCGg -3'
miRNA:   3'- aGCG-GUGGUcUUCGCGUUugCC----CUGC- -5'
13115 3' -55.6 NC_003401.1 + 42279 0.66 0.903497
Target:  5'- cCGCCACCAGggGauCGCuguacagcuugguGAACGGcACc -3'
miRNA:   3'- aGCGGUGGUCuuC--GCG-------------UUUGCCcUGc -5'
13115 3' -55.6 NC_003401.1 + 42332 0.66 0.900303
Target:  5'- gCGCUggGCCGGcAGGCGCGucAcguaauuugcgaccaGCGGGugGa -3'
miRNA:   3'- aGCGG--UGGUC-UUCGCGU--U---------------UGCCCugC- -5'
13115 3' -55.6 NC_003401.1 + 109959 0.66 0.897706
Target:  5'- cCGCCccGCCuuuAGCGUAuACGGGAg- -3'
miRNA:   3'- aGCGG--UGGucuUCGCGUuUGCCCUgc -5'
13115 3' -55.6 NC_003401.1 + 107639 0.66 0.893739
Target:  5'- cCGCCACCGGgcGCGgggccCAucgagccuaucaaugAAUGGGGCc -3'
miRNA:   3'- aGCGGUGGUCuuCGC-----GU---------------UUGCCCUGc -5'
13115 3' -55.6 NC_003401.1 + 29973 0.66 0.891048
Target:  5'- gUGCCagACCGGggG-GCGAugGGuGCGa -3'
miRNA:   3'- aGCGG--UGGUCuuCgCGUUugCCcUGC- -5'
13115 3' -55.6 NC_003401.1 + 119650 0.66 0.891048
Target:  5'- aCGCC-CgAGggGUuuGCAAACGGG-Cu -3'
miRNA:   3'- aGCGGuGgUCuuCG--CGUUUGCCCuGc -5'
13115 3' -55.6 NC_003401.1 + 127141 0.66 0.88416
Target:  5'- cUCGUgGCuCAGcAGUGCGAAgUGGGACc -3'
miRNA:   3'- -AGCGgUG-GUCuUCGCGUUU-GCCCUGc -5'
13115 3' -55.6 NC_003401.1 + 121149 0.67 0.877044
Target:  5'- aUCGCggcgggCGCgGGggGCGCGG--GGGGCGc -3'
miRNA:   3'- -AGCG------GUGgUCuuCGCGUUugCCCUGC- -5'
13115 3' -55.6 NC_003401.1 + 78045 0.67 0.877044
Target:  5'- cCGCgGCCAGccauuGCGUcucugcggauAAACGGGGCc -3'
miRNA:   3'- aGCGgUGGUCuu---CGCG----------UUUGCCCUGc -5'
13115 3' -55.6 NC_003401.1 + 112126 0.67 0.869706
Target:  5'- gUGCCuggauGCCGGucGCGUGGACuGGGGCc -3'
miRNA:   3'- aGCGG-----UGGUCuuCGCGUUUG-CCCUGc -5'
13115 3' -55.6 NC_003401.1 + 132500 0.67 0.869706
Target:  5'- -gGCCGCgGGcccGgGCcGGCGGGGCGg -3'
miRNA:   3'- agCGGUGgUCuu-CgCGuUUGCCCUGC- -5'
13115 3' -55.6 NC_003401.1 + 122138 0.67 0.868961
Target:  5'- gCGgCACUAGAgaacaggccgggaGGCGCGGcAgGGGGCGu -3'
miRNA:   3'- aGCgGUGGUCU-------------UCGCGUU-UgCCCUGC- -5'
13115 3' -55.6 NC_003401.1 + 132432 0.67 0.846417
Target:  5'- -gGCC-CgGGggGCGCGcGgGGGACc -3'
miRNA:   3'- agCGGuGgUCuuCGCGUuUgCCCUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.