miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13115 3' -55.6 NC_003401.1 + 132804 0.66 0.916259
Target:  5'- -gGCCccccucCCGGcGGCGCGGAgaccaccuuuCGGGGCGg -3'
miRNA:   3'- agCGGu-----GGUCuUCGCGUUU----------GCCCUGC- -5'
13115 3' -55.6 NC_003401.1 + 132653 0.76 0.377536
Target:  5'- gCGCCGCCGGGAGgGgGGcCGGGGCc -3'
miRNA:   3'- aGCGGUGGUCUUCgCgUUuGCCCUGc -5'
13115 3' -55.6 NC_003401.1 + 132651 0.75 0.447504
Target:  5'- gCGCCGCCGGGcucGGC-CGGAcCGGGGCGc -3'
miRNA:   3'- aGCGGUGGUCU---UCGcGUUU-GCCCUGC- -5'
13115 3' -55.6 NC_003401.1 + 132538 0.72 0.615472
Target:  5'- -aGCgGCCcGgcGCGCGGcGCGGGGCGg -3'
miRNA:   3'- agCGgUGGuCuuCGCGUU-UGCCCUGC- -5'
13115 3' -55.6 NC_003401.1 + 132500 0.67 0.869706
Target:  5'- -gGCCGCgGGcccGgGCcGGCGGGGCGg -3'
miRNA:   3'- agCGGUGgUCuu-CgCGuUUGCCCUGC- -5'
13115 3' -55.6 NC_003401.1 + 132432 0.67 0.846417
Target:  5'- -gGCC-CgGGggGCGCGcGgGGGACc -3'
miRNA:   3'- agCGGuGgUCuuCGCGUuUgCCCUGc -5'
13115 3' -55.6 NC_003401.1 + 132235 0.7 0.697638
Target:  5'- cCGCCGCCGGGccgcGGCcgccaucuuGCGccCGGGGCGa -3'
miRNA:   3'- aGCGGUGGUCU----UCG---------CGUuuGCCCUGC- -5'
13115 3' -55.6 NC_003401.1 + 127705 0.69 0.737664
Target:  5'- -gGCCACCuGGGAGCcCuggucucGCGGGGCGg -3'
miRNA:   3'- agCGGUGG-UCUUCGcGuu-----UGCCCUGC- -5'
13115 3' -55.6 NC_003401.1 + 127141 0.66 0.88416
Target:  5'- cUCGUgGCuCAGcAGUGCGAAgUGGGACc -3'
miRNA:   3'- -AGCGgUG-GUCuUCGCGUUU-GCCCUGc -5'
13115 3' -55.6 NC_003401.1 + 126120 0.73 0.514223
Target:  5'- -aGCCACugCAGggGCGUuuccucuGACGGGAUGc -3'
miRNA:   3'- agCGGUG--GUCuuCGCGu------UUGCCCUGC- -5'
13115 3' -55.6 NC_003401.1 + 125700 0.69 0.776196
Target:  5'- -gGCgGCCAucAGCGCccugggAAGCGGGGCa -3'
miRNA:   3'- agCGgUGGUcuUCGCG------UUUGCCCUGc -5'
13115 3' -55.6 NC_003401.1 + 125024 0.68 0.820487
Target:  5'- aCGCCcacuGCCAGggGUGgAAcgucacgGCGGGGuCGa -3'
miRNA:   3'- aGCGG----UGGUCuuCGCgUU-------UGCCCU-GC- -5'
13115 3' -55.6 NC_003401.1 + 123818 0.66 0.910314
Target:  5'- uUCGCU-CUGGGAGgGCGAGC-GGACa -3'
miRNA:   3'- -AGCGGuGGUCUUCgCGUUUGcCCUGc -5'
13115 3' -55.6 NC_003401.1 + 122138 0.67 0.868961
Target:  5'- gCGgCACUAGAgaacaggccgggaGGCGCGGcAgGGGGCGu -3'
miRNA:   3'- aGCgGUGGUCU-------------UCGCGUU-UgCCCUGC- -5'
13115 3' -55.6 NC_003401.1 + 121149 0.67 0.877044
Target:  5'- aUCGCggcgggCGCgGGggGCGCGG--GGGGCGc -3'
miRNA:   3'- -AGCG------GUGgUCuuCGCGUUugCCCUGC- -5'
13115 3' -55.6 NC_003401.1 + 119844 0.71 0.636101
Target:  5'- cCGCCACCAGGgacgGGgGCAGACcgccGGugGc -3'
miRNA:   3'- aGCGGUGGUCU----UCgCGUUUGc---CCugC- -5'
13115 3' -55.6 NC_003401.1 + 119650 0.66 0.891048
Target:  5'- aCGCC-CgAGggGUuuGCAAACGGG-Cu -3'
miRNA:   3'- aGCGGuGgUCuuCG--CGUUUGCCCuGc -5'
13115 3' -55.6 NC_003401.1 + 118338 0.71 0.636101
Target:  5'- cCGCCGCCGGGGuCGCccGCGGGuCa -3'
miRNA:   3'- aGCGGUGGUCUUcGCGuuUGCCCuGc -5'
13115 3' -55.6 NC_003401.1 + 118267 0.7 0.687469
Target:  5'- uUUGCCGCCcGggGuCGCcGGCGGGuCa -3'
miRNA:   3'- -AGCGGUGGuCuuC-GCGuUUGCCCuGc -5'
13115 3' -55.6 NC_003401.1 + 117799 0.66 0.904129
Target:  5'- aUGCgCACCAuGGGUGCGAugGGcaccGGCGg -3'
miRNA:   3'- aGCG-GUGGUcUUCGCGUUugCC----CUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.