Results 1 - 20 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13118 | 3' | -59.5 | NC_003401.1 | + | 29295 | 1.1 | 0.001149 |
Target: 5'- aCGCGCCACAUCAGCCCCCGAAGACCGg -3' miRNA: 3'- -GCGCGGUGUAGUCGGGGGCUUCUGGC- -5' |
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13118 | 3' | -59.5 | NC_003401.1 | + | 31277 | 0.79 | 0.151367 |
Target: 5'- aCGCGUucguuguCACAaUAGCCCCCGGAGACCc -3' miRNA: 3'- -GCGCG-------GUGUaGUCGGGGGCUUCUGGc -5' |
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13118 | 3' | -59.5 | NC_003401.1 | + | 89657 | 0.78 | 0.171899 |
Target: 5'- cCGCGCCGCAccgUCAGCCUCCGccGGAgCGg -3' miRNA: 3'- -GCGCGGUGU---AGUCGGGGGCu-UCUgGC- -5' |
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13118 | 3' | -59.5 | NC_003401.1 | + | 118098 | 0.76 | 0.230218 |
Target: 5'- gCGCGCCAcCAUgGGCCCCaGAuuuGGGCCGc -3' miRNA: 3'- -GCGCGGU-GUAgUCGGGGgCU---UCUGGC- -5' |
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13118 | 3' | -59.5 | NC_003401.1 | + | 76764 | 0.76 | 0.235766 |
Target: 5'- -cUGCUACAUCAcGCCCCUGGAGACUc -3' miRNA: 3'- gcGCGGUGUAGU-CGGGGGCUUCUGGc -5' |
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13118 | 3' | -59.5 | NC_003401.1 | + | 43046 | 0.73 | 0.332879 |
Target: 5'- aCGCGUCACAcgagaUCAcgcaggaugcccGUCCCCGggGACUGu -3' miRNA: 3'- -GCGCGGUGU-----AGU------------CGGGGGCuuCUGGC- -5' |
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13118 | 3' | -59.5 | NC_003401.1 | + | 123294 | 0.72 | 0.412393 |
Target: 5'- uCGCuGCaacguaACGUCGGUggaCCCCGAAGACCu -3' miRNA: 3'- -GCG-CGg-----UGUAGUCG---GGGGCUUCUGGc -5' |
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13118 | 3' | -59.5 | NC_003401.1 | + | 132556 | 0.71 | 0.465393 |
Target: 5'- cCGCGgCGCG-CGGCUCCCGAu-GCCGg -3' miRNA: 3'- -GCGCgGUGUaGUCGGGGGCUucUGGC- -5' |
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13118 | 3' | -59.5 | NC_003401.1 | + | 9319 | 0.7 | 0.492247 |
Target: 5'- -uCGCCACcgcuuccuGUCAGcCCCCCGAGGAacagcuaCCGa -3' miRNA: 3'- gcGCGGUG--------UAGUC-GGGGGCUUCU-------GGC- -5' |
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13118 | 3' | -59.5 | NC_003401.1 | + | 132819 | 0.7 | 0.492247 |
Target: 5'- gGCGCCcCGggcccCGGCCCCCcucccggcggcgcGGAGACCa -3' miRNA: 3'- gCGCGGuGUa----GUCGGGGG-------------CUUCUGGc -5' |
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13118 | 3' | -59.5 | NC_003401.1 | + | 69703 | 0.7 | 0.50262 |
Target: 5'- gGCGCCGCAaCAGUaaaccacccuuUCCCG-GGACCGu -3' miRNA: 3'- gCGCGGUGUaGUCG-----------GGGGCuUCUGGC- -5' |
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13118 | 3' | -59.5 | NC_003401.1 | + | 27496 | 0.7 | 0.50262 |
Target: 5'- aGCGCCAC--UAGCgCCaGAAGACCa -3' miRNA: 3'- gCGCGGUGuaGUCGgGGgCUUCUGGc -5' |
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13118 | 3' | -59.5 | NC_003401.1 | + | 18565 | 0.69 | 0.550866 |
Target: 5'- -aCGCCACGguaCAGCuCCCUGGuguGGGCCGc -3' miRNA: 3'- gcGCGGUGUa--GUCG-GGGGCU---UCUGGC- -5' |
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13118 | 3' | -59.5 | NC_003401.1 | + | 17957 | 0.69 | 0.550866 |
Target: 5'- gGCGCaaaggaaauCAUCuacGCUCCCGggGACCc -3' miRNA: 3'- gCGCGgu-------GUAGu--CGGGGGCuuCUGGc -5' |
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13118 | 3' | -59.5 | NC_003401.1 | + | 81471 | 0.69 | 0.550866 |
Target: 5'- uGCGCgaGCAUCGGCUgCCaGGGGCCa -3' miRNA: 3'- gCGCGg-UGUAGUCGGgGGcUUCUGGc -5' |
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13118 | 3' | -59.5 | NC_003401.1 | + | 16761 | 0.69 | 0.560696 |
Target: 5'- gGCGCgGCAUC-GCUCCUGGacaaacuugcAGGCCGu -3' miRNA: 3'- gCGCGgUGUAGuCGGGGGCU----------UCUGGC- -5' |
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13118 | 3' | -59.5 | NC_003401.1 | + | 118729 | 0.69 | 0.590449 |
Target: 5'- cCGCGCCGCuuggCGGCgcggcuuccuCCCCcAAGACCc -3' miRNA: 3'- -GCGCGGUGua--GUCG----------GGGGcUUCUGGc -5' |
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13118 | 3' | -59.5 | NC_003401.1 | + | 119945 | 0.68 | 0.600433 |
Target: 5'- uGCGCCGCcucCGGCCagauuggCGGAGGCCGu -3' miRNA: 3'- gCGCGGUGua-GUCGGgg-----GCUUCUGGC- -5' |
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13118 | 3' | -59.5 | NC_003401.1 | + | 74000 | 0.68 | 0.61044 |
Target: 5'- -cCGCCACAcUCaaAGCCaaaccgaaCCGGAGACCGc -3' miRNA: 3'- gcGCGGUGU-AG--UCGGg-------GGCUUCUGGC- -5' |
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13118 | 3' | -59.5 | NC_003401.1 | + | 126653 | 0.68 | 0.619459 |
Target: 5'- aGCGCCacccaacaGCAUCagacgguAGCCCCCGu--GCCGu -3' miRNA: 3'- gCGCGG--------UGUAG-------UCGGGGGCuucUGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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