miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13118 3' -59.5 NC_003401.1 + 9319 0.7 0.492247
Target:  5'- -uCGCCACcgcuuccuGUCAGcCCCCCGAGGAacagcuaCCGa -3'
miRNA:   3'- gcGCGGUG--------UAGUC-GGGGGCUUCU-------GGC- -5'
13118 3' -59.5 NC_003401.1 + 16761 0.69 0.560696
Target:  5'- gGCGCgGCAUC-GCUCCUGGacaaacuugcAGGCCGu -3'
miRNA:   3'- gCGCGgUGUAGuCGGGGGCU----------UCUGGC- -5'
13118 3' -59.5 NC_003401.1 + 17503 0.67 0.670553
Target:  5'- aCGCGgCGCGcgUGGCCCCCGGguucgugcuGGACUc -3'
miRNA:   3'- -GCGCgGUGUa-GUCGGGGGCU---------UCUGGc -5'
13118 3' -59.5 NC_003401.1 + 17646 0.67 0.660563
Target:  5'- gCGCGCCGCGUCcgcgucGCCgCCGGAauCCa -3'
miRNA:   3'- -GCGCGGUGUAGu-----CGGgGGCUUcuGGc -5'
13118 3' -59.5 NC_003401.1 + 17957 0.69 0.550866
Target:  5'- gGCGCaaaggaaauCAUCuacGCUCCCGggGACCc -3'
miRNA:   3'- gCGCGgu-------GUAGu--CGGGGGCuuCUGGc -5'
13118 3' -59.5 NC_003401.1 + 18565 0.69 0.550866
Target:  5'- -aCGCCACGguaCAGCuCCCUGGuguGGGCCGc -3'
miRNA:   3'- gcGCGGUGUa--GUCG-GGGGCU---UCUGGC- -5'
13118 3' -59.5 NC_003401.1 + 20257 0.66 0.739171
Target:  5'- cCGCGgC-CAUUGGCUCCgCGguGACCGu -3'
miRNA:   3'- -GCGCgGuGUAGUCGGGG-GCuuCUGGC- -5'
13118 3' -59.5 NC_003401.1 + 21309 0.66 0.748685
Target:  5'- uCGCcCuCGCggCGGUCCCCGAAGcCCu -3'
miRNA:   3'- -GCGcG-GUGuaGUCGGGGGCUUCuGGc -5'
13118 3' -59.5 NC_003401.1 + 23327 0.66 0.739171
Target:  5'- cCGCcCUGCAccCGGCuCCCCGAGGucACCGa -3'
miRNA:   3'- -GCGcGGUGUa-GUCG-GGGGCUUC--UGGC- -5'
13118 3' -59.5 NC_003401.1 + 23394 0.66 0.758099
Target:  5'- gCGCGCguggcaACAUCuuucgguGCCCuCCGAAcGACCc -3'
miRNA:   3'- -GCGCGg-----UGUAGu------CGGG-GGCUU-CUGGc -5'
13118 3' -59.5 NC_003401.1 + 27496 0.7 0.50262
Target:  5'- aGCGCCAC--UAGCgCCaGAAGACCa -3'
miRNA:   3'- gCGCGGUGuaGUCGgGGgCUUCUGGc -5'
13118 3' -59.5 NC_003401.1 + 29295 1.1 0.001149
Target:  5'- aCGCGCCACAUCAGCCCCCGAAGACCGg -3'
miRNA:   3'- -GCGCGGUGUAGUCGGGGGCUUCUGGC- -5'
13118 3' -59.5 NC_003401.1 + 31277 0.79 0.151367
Target:  5'- aCGCGUucguuguCACAaUAGCCCCCGGAGACCc -3'
miRNA:   3'- -GCGCG-------GUGUaGUCGGGGGCUUCUGGc -5'
13118 3' -59.5 NC_003401.1 + 42390 0.68 0.640525
Target:  5'- uGUGCCACuccucguacUCGGCCa-UGAGGGCCGg -3'
miRNA:   3'- gCGCGGUGu--------AGUCGGggGCUUCUGGC- -5'
13118 3' -59.5 NC_003401.1 + 42999 0.68 0.620462
Target:  5'- gGCGUCGCAgCAGggcuCCCUCGGAGACg- -3'
miRNA:   3'- gCGCGGUGUaGUC----GGGGGCUUCUGgc -5'
13118 3' -59.5 NC_003401.1 + 43046 0.73 0.332879
Target:  5'- aCGCGUCACAcgagaUCAcgcaggaugcccGUCCCCGggGACUGu -3'
miRNA:   3'- -GCGCGGUGU-----AGU------------CGGGGGCuuCUGGC- -5'
13118 3' -59.5 NC_003401.1 + 43953 0.67 0.710128
Target:  5'- aCG-GUCGCAUCuuuGCgCCCaAAGACCGg -3'
miRNA:   3'- -GCgCGGUGUAGu--CGgGGGcUUCUGGC- -5'
13118 3' -59.5 NC_003401.1 + 53187 0.66 0.747738
Target:  5'- uGCGCCuGCG--GGCCCCCGgcGcacgacagcagacACCGg -3'
miRNA:   3'- gCGCGG-UGUagUCGGGGGCuuC-------------UGGC- -5'
13118 3' -59.5 NC_003401.1 + 55189 0.66 0.719884
Target:  5'- aGCGCCGCGggggCAGUCCCaucu-GCCGu -3'
miRNA:   3'- gCGCGGUGUa---GUCGGGGgcuucUGGC- -5'
13118 3' -59.5 NC_003401.1 + 64691 0.66 0.729568
Target:  5'- gCGCGCCAucCGUCu-CCCCUGGcuACCGc -3'
miRNA:   3'- -GCGCGGU--GUAGucGGGGGCUucUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.