miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13120 5' -61.5 NC_003401.1 + 118119 0.66 0.656408
Target:  5'- gACCCCGGg--CGGcaaaAGCCGCCccaUGGGc -3'
miRNA:   3'- -UGGGGCCaugGCCag--UCGGUGG---ACCU- -5'
13120 5' -61.5 NC_003401.1 + 115900 0.66 0.606761
Target:  5'- cACCCCGGaGCCGaGcCgcccccacccggAGCCACCccGGAg -3'
miRNA:   3'- -UGGGGCCaUGGC-CaG------------UCGGUGGa-CCU- -5'
13120 5' -61.5 NC_003401.1 + 116156 0.66 0.606761
Target:  5'- cACCCCGGaGCCGaGcCgcccccacccggAGCCACCccGGAg -3'
miRNA:   3'- -UGGGGCCaUGGC-CaG------------UCGGUGGa-CCU- -5'
13120 5' -61.5 NC_003401.1 + 116220 0.66 0.606761
Target:  5'- cACCCCGGaGCCGaGcCgcccccacccggAGCCACCccGGAg -3'
miRNA:   3'- -UGGGGCCaUGGC-CaG------------UCGGUGGa-CCU- -5'
13120 5' -61.5 NC_003401.1 + 116284 0.66 0.606761
Target:  5'- cACCCCGGaGCCGaGcCgcccccacccggAGCCACCccGGAg -3'
miRNA:   3'- -UGGGGCCaUGGC-CaG------------UCGGUGGa-CCU- -5'
13120 5' -61.5 NC_003401.1 + 116348 0.66 0.606761
Target:  5'- cACCCCGGaGCCGaGcCgcccccacccggAGCCACCccGGAg -3'
miRNA:   3'- -UGGGGCCaUGGC-CaG------------UCGGUGGa-CCU- -5'
13120 5' -61.5 NC_003401.1 + 116412 0.66 0.606761
Target:  5'- cACCCCGGaGCCGaGcCgcccccacccggAGCCACCccGGAg -3'
miRNA:   3'- -UGGGGCCaUGGC-CaG------------UCGGUGGa-CCU- -5'
13120 5' -61.5 NC_003401.1 + 115836 0.66 0.606761
Target:  5'- cACCCCGGaGCCGaGcCgcccccacccggAGCCACCccGGAg -3'
miRNA:   3'- -UGGGGCCaUGGC-CaG------------UCGGUGGa-CCU- -5'
13120 5' -61.5 NC_003401.1 + 115964 0.66 0.606761
Target:  5'- cACCCCGGaGCCGaGcCgcccccacccggAGCCACCccGGAg -3'
miRNA:   3'- -UGGGGCCaUGGC-CaG------------UCGGUGGa-CCU- -5'
13120 5' -61.5 NC_003401.1 + 116028 0.66 0.606761
Target:  5'- cACCCCGGaGCCGaGcCgcccccacccggAGCCACCccGGAg -3'
miRNA:   3'- -UGGGGCCaUGGC-CaG------------UCGGUGGa-CCU- -5'
13120 5' -61.5 NC_003401.1 + 116092 0.66 0.606761
Target:  5'- cACCCCGGaGCCGaGcCgcccccacccggAGCCACCccGGAg -3'
miRNA:   3'- -UGGGGCCaUGGC-CaG------------UCGGUGGa-CCU- -5'
13120 5' -61.5 NC_003401.1 + 115709 0.66 0.606761
Target:  5'- cACCCCGGaGCCGaGcCgcccccacccggAGCCACCccGGAg -3'
miRNA:   3'- -UGGGGCCaUGGC-CaG------------UCGGUGGa-CCU- -5'
13120 5' -61.5 NC_003401.1 + 115645 0.66 0.606761
Target:  5'- cACCCCGGaGCCGaGcCgcccccacccggAGCCACCccGGAg -3'
miRNA:   3'- -UGGGGCCaUGGC-CaG------------UCGGUGGa-CCU- -5'
13120 5' -61.5 NC_003401.1 + 115581 0.66 0.606761
Target:  5'- cACCCCGGaGCCGaGcCgcccccacccggAGCCACCccGGAg -3'
miRNA:   3'- -UGGGGCCaUGGC-CaG------------UCGGUGGa-CCU- -5'
13120 5' -61.5 NC_003401.1 + 115517 0.66 0.606761
Target:  5'- cACCCCGGaGCCGaGcCgcccccacccggAGCCACCccGGAg -3'
miRNA:   3'- -UGGGGCCaUGGC-CaG------------UCGGUGGa-CCU- -5'
13120 5' -61.5 NC_003401.1 + 115453 0.66 0.606761
Target:  5'- cACCCCGGaGCCGaGcCgcccccacccggAGCCACCccGGAg -3'
miRNA:   3'- -UGGGGCCaUGGC-CaG------------UCGGUGGa-CCU- -5'
13120 5' -61.5 NC_003401.1 + 115772 0.67 0.596857
Target:  5'- cACCCCGGaGCCGaGcCcccccacccggAGCCACCccGGAg -3'
miRNA:   3'- -UGGGGCCaUGGC-CaG-----------UCGGUGGa-CCU- -5'
13120 5' -61.5 NC_003401.1 + 104893 0.67 0.596857
Target:  5'- aACCCCGGUuCCGa-CGGCCcccggUCUGGAa -3'
miRNA:   3'- -UGGGGCCAuGGCcaGUCGGu----GGACCU- -5'
13120 5' -61.5 NC_003401.1 + 132681 0.67 0.557549
Target:  5'- gGCCCCGGgcCCGGggggCGucggggcgcggcGCCGCCgGGc -3'
miRNA:   3'- -UGGGGCCauGGCCa---GU------------CGGUGGaCCu -5'
13120 5' -61.5 NC_003401.1 + 14189 0.67 0.557549
Target:  5'- gGCgCCGGaGCCGuUCAGCCGCCa--- -3'
miRNA:   3'- -UGgGGCCaUGGCcAGUCGGUGGaccu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.