miRNA display CGI


Results 21 - 40 of 45 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13126 3' -53.1 NC_003401.1 + 69774 0.66 0.953448
Target:  5'- ---gGGACCGuugcGGCGGUuuCGGCg -3'
miRNA:   3'- cuagCCUGGUuagaUCGCCGuuGCCG- -5'
13126 3' -53.1 NC_003401.1 + 69931 0.66 0.967906
Target:  5'- aGGUUaGuCCGccAUCUAGCGGCcACGGa -3'
miRNA:   3'- -CUAGcCuGGU--UAGAUCGCCGuUGCCg -5'
13126 3' -53.1 NC_003401.1 + 70495 0.69 0.87188
Target:  5'- -uUCGGcaGCUAcgCUGcCGGCGACGGUu -3'
miRNA:   3'- cuAGCC--UGGUuaGAUcGCCGUUGCCG- -5'
13126 3' -53.1 NC_003401.1 + 80175 0.77 0.460876
Target:  5'- -cUCGGGCC--UCUGG-GGUAGCGGCa -3'
miRNA:   3'- cuAGCCUGGuuAGAUCgCCGUUGCCG- -5'
13126 3' -53.1 NC_003401.1 + 84034 0.7 0.82283
Target:  5'- cGGagGGACCAA-CgugGGCaagggggcgGGCAGCGGCa -3'
miRNA:   3'- -CUagCCUGGUUaGa--UCG---------CCGUUGCCG- -5'
13126 3' -53.1 NC_003401.1 + 88947 0.66 0.961141
Target:  5'- -uUCGGGCaCAcgCcguagGGCuGGCAgggACGGCa -3'
miRNA:   3'- cuAGCCUG-GUuaGa----UCG-CCGU---UGCCG- -5'
13126 3' -53.1 NC_003401.1 + 89607 0.67 0.94433
Target:  5'- gGAUgCGGuggugcaaccgucGCCAAcCUGGCGGCccUGGCa -3'
miRNA:   3'- -CUA-GCC-------------UGGUUaGAUCGCCGuuGCCG- -5'
13126 3' -53.1 NC_003401.1 + 98874 0.67 0.946599
Target:  5'- gGAUCGGAUaCAGUUUuguuuuaaugaacucGGCGGCGAaucccgGGCu -3'
miRNA:   3'- -CUAGCCUG-GUUAGA---------------UCGCCGUUg-----CCG- -5'
13126 3' -53.1 NC_003401.1 + 103346 0.66 0.957413
Target:  5'- cGGUUGGACCAAagCUGGUGcGCuucAUGGa -3'
miRNA:   3'- -CUAGCCUGGUUa-GAUCGC-CGu--UGCCg -5'
13126 3' -53.1 NC_003401.1 + 103907 0.67 0.929934
Target:  5'- ---aGaGGCCAgcAUCUcGGCGGCcgAACGGCu -3'
miRNA:   3'- cuagC-CUGGU--UAGA-UCGCCG--UUGCCG- -5'
13126 3' -53.1 NC_003401.1 + 105120 0.72 0.73756
Target:  5'- uGUCGGGCCAcuGUCUGuccauccacguuGCGGCcucugccccGCGGCg -3'
miRNA:   3'- cUAGCCUGGU--UAGAU------------CGCCGu--------UGCCG- -5'
13126 3' -53.1 NC_003401.1 + 105464 0.67 0.929934
Target:  5'- --cUGGGCC--UCUAGCGuuaGguGCGGCa -3'
miRNA:   3'- cuaGCCUGGuuAGAUCGC---CguUGCCG- -5'
13126 3' -53.1 NC_003401.1 + 106323 0.7 0.813967
Target:  5'- -uUUGG-CCAGUCUGGgGGguAUGGUc -3'
miRNA:   3'- cuAGCCuGGUUAGAUCgCCguUGCCG- -5'
13126 3' -53.1 NC_003401.1 + 112858 0.82 0.248229
Target:  5'- cGUCGGugCAGUCUagGGUGGCcACGGCc -3'
miRNA:   3'- cUAGCCugGUUAGA--UCGCCGuUGCCG- -5'
13126 3' -53.1 NC_003401.1 + 117897 0.68 0.918769
Target:  5'- --cCGGGCgCGgggGUUcGGCGGCggUGGCa -3'
miRNA:   3'- cuaGCCUG-GU---UAGaUCGCCGuuGCCG- -5'
13126 3' -53.1 NC_003401.1 + 119780 0.74 0.611809
Target:  5'- --aCGGccuccGCCAAUCUggccggaGGCGGCGcaGCGGCa -3'
miRNA:   3'- cuaGCC-----UGGUUAGA-------UCGCCGU--UGCCG- -5'
13126 3' -53.1 NC_003401.1 + 120832 0.66 0.961141
Target:  5'- --aCGGGCCuuUUugacggccuUGGCGGUuccGCGGCu -3'
miRNA:   3'- cuaGCCUGGuuAG---------AUCGCCGu--UGCCG- -5'
13126 3' -53.1 NC_003401.1 + 121920 0.66 0.964637
Target:  5'- uGUUGGAgCGGggggcGCGGguGCGGCg -3'
miRNA:   3'- cUAGCCUgGUUagau-CGCCguUGCCG- -5'
13126 3' -53.1 NC_003401.1 + 123411 0.69 0.859541
Target:  5'- gGAagGGACgAgccacuacgugguggGUgUGGUGGCAGCGGCc -3'
miRNA:   3'- -CUagCCUGgU---------------UAgAUCGCCGUUGCCG- -5'
13126 3' -53.1 NC_003401.1 + 125744 0.71 0.786365
Target:  5'- ---aGGcGCCAcugCUGGCGGCcucGACGGCg -3'
miRNA:   3'- cuagCC-UGGUua-GAUCGCCG---UUGCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.