miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13126 3' -53.1 NC_003401.1 + 10666 0.76 0.529902
Target:  5'- --aCGGACCAccaccgUGGCGGCAaccGCGGCa -3'
miRNA:   3'- cuaGCCUGGUuag---AUCGCCGU---UGCCG- -5'
13126 3' -53.1 NC_003401.1 + 12049 0.67 0.943404
Target:  5'- cGGUCGGaugaccucuugcuuGCCGGUCacGGCGGUcuCGGUc -3'
miRNA:   3'- -CUAGCC--------------UGGUUAGa-UCGCCGuuGCCG- -5'
13126 3' -53.1 NC_003401.1 + 13662 0.67 0.949241
Target:  5'- --gCGGGCCA----GGCGGUcGCGGUu -3'
miRNA:   3'- cuaGCCUGGUuagaUCGCCGuUGCCG- -5'
13126 3' -53.1 NC_003401.1 + 14174 0.68 0.918769
Target:  5'- cGAUUGG-CCGcgcggcUCUGGCGG--GCGGCa -3'
miRNA:   3'- -CUAGCCuGGUu-----AGAUCGCCguUGCCG- -5'
13126 3' -53.1 NC_003401.1 + 18147 0.66 0.964637
Target:  5'- -cUCGGGgCGAUCUGGCguuucuGGUcACGGg -3'
miRNA:   3'- cuAGCCUgGUUAGAUCG------CCGuUGCCg -5'
13126 3' -53.1 NC_003401.1 + 18411 0.66 0.953448
Target:  5'- cGGUCGGuuucCCAGg--GGUGGUcuCGGCg -3'
miRNA:   3'- -CUAGCCu---GGUUagaUCGCCGuuGCCG- -5'
13126 3' -53.1 NC_003401.1 + 18454 0.7 0.848287
Target:  5'- --aCGGGgCAGggc-GCGGCGGCGGCc -3'
miRNA:   3'- cuaGCCUgGUUagauCGCCGUUGCCG- -5'
13126 3' -53.1 NC_003401.1 + 18531 0.74 0.644427
Target:  5'- cGAguggCaGACCucgAGUCUAGUGGaCAACGGCa -3'
miRNA:   3'- -CUa---GcCUGG---UUAGAUCGCC-GUUGCCG- -5'
13126 3' -53.1 NC_003401.1 + 23826 0.71 0.795725
Target:  5'- cAUUGGACg---CUGGCGGCAGCcaaugGGCg -3'
miRNA:   3'- cUAGCCUGguuaGAUCGCCGUUG-----CCG- -5'
13126 3' -53.1 NC_003401.1 + 28026 0.66 0.961141
Target:  5'- cGUCGGAaagcuccacgucCCGuuugcgcuUCUGGUGGCGagACGGUg -3'
miRNA:   3'- cUAGCCU------------GGUu-------AGAUCGCCGU--UGCCG- -5'
13126 3' -53.1 NC_003401.1 + 28180 0.66 0.964637
Target:  5'- cGAUgGGA-CGGUC-AGCucaGGCGGCGGUa -3'
miRNA:   3'- -CUAgCCUgGUUAGaUCG---CCGUUGCCG- -5'
13126 3' -53.1 NC_003401.1 + 30335 0.69 0.87188
Target:  5'- ---gGGugCGuAUCUAGCGGCGcuggaGGCa -3'
miRNA:   3'- cuagCCugGU-UAGAUCGCCGUug---CCG- -5'
13126 3' -53.1 NC_003401.1 + 30771 0.66 0.964637
Target:  5'- ---aGaGGCCGuuucgagUUGGCGGCAACGGg -3'
miRNA:   3'- cuagC-CUGGUua-----GAUCGCCGUUGCCg -5'
13126 3' -53.1 NC_003401.1 + 33152 0.68 0.918769
Target:  5'- aGGUUGcGACCGAUgCcGGCGGCugucgcacgaAACGGUa -3'
miRNA:   3'- -CUAGC-CUGGUUA-GaUCGCCG----------UUGCCG- -5'
13126 3' -53.1 NC_003401.1 + 41731 0.69 0.856368
Target:  5'- --aCGG-UCAcGUCU-GCGGCAugGGCg -3'
miRNA:   3'- cuaGCCuGGU-UAGAuCGCCGUugCCG- -5'
13126 3' -53.1 NC_003401.1 + 44940 0.68 0.893431
Target:  5'- --cCGGaACCAGUaguGCGGCAA-GGCg -3'
miRNA:   3'- cuaGCC-UGGUUAgauCGCCGUUgCCG- -5'
13126 3' -53.1 NC_003401.1 + 44997 0.66 0.952626
Target:  5'- uGGUCGGAUUuuaaau-CGGCAAUGGCg -3'
miRNA:   3'- -CUAGCCUGGuuagaucGCCGUUGCCG- -5'
13126 3' -53.1 NC_003401.1 + 48609 1.11 0.003575
Target:  5'- gGAUCGGACCAAUCUAGCGGCAACGGCc -3'
miRNA:   3'- -CUAGCCUGGUUAGAUCGCCGUUGCCG- -5'
13126 3' -53.1 NC_003401.1 + 52423 0.7 0.839999
Target:  5'- -cUgGGGCCAGUgUAGUcaccaGGCGACGGa -3'
miRNA:   3'- cuAgCCUGGUUAgAUCG-----CCGUUGCCg -5'
13126 3' -53.1 NC_003401.1 + 58292 0.67 0.944788
Target:  5'- aGcgUGGACCAAUCUGcUGGUAcaaggaAUGGCc -3'
miRNA:   3'- -CuaGCCUGGUUAGAUcGCCGU------UGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.