miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13126 3' -53.1 NC_003401.1 + 88947 0.66 0.961141
Target:  5'- -uUCGGGCaCAcgCcguagGGCuGGCAgggACGGCa -3'
miRNA:   3'- cuAGCCUG-GUuaGa----UCG-CCGU---UGCCG- -5'
13126 3' -53.1 NC_003401.1 + 128814 0.68 0.893431
Target:  5'- cGUUGGGCCAuauuugcuaaGUCUAGCcGGCGcaaaagcaaGCGGg -3'
miRNA:   3'- cUAGCCUGGU----------UAGAUCG-CCGU---------UGCCg -5'
13126 3' -53.1 NC_003401.1 + 103907 0.67 0.929934
Target:  5'- ---aGaGGCCAgcAUCUcGGCGGCcgAACGGCu -3'
miRNA:   3'- cuagC-CUGGU--UAGA-UCGCCG--UUGCCG- -5'
13126 3' -53.1 NC_003401.1 + 127996 0.67 0.94433
Target:  5'- ---aGGGCCGAUCUgauuucgcccccgGGCaGCAGCguGGCa -3'
miRNA:   3'- cuagCCUGGUUAGA-------------UCGcCGUUG--CCG- -5'
13126 3' -53.1 NC_003401.1 + 89607 0.67 0.94433
Target:  5'- gGAUgCGGuggugcaaccgucGCCAAcCUGGCGGCccUGGCa -3'
miRNA:   3'- -CUA-GCC-------------UGGUUaGAUCGCCGuuGCCG- -5'
13126 3' -53.1 NC_003401.1 + 58292 0.67 0.944788
Target:  5'- aGcgUGGACCAAUCUGcUGGUAcaaggaAUGGCc -3'
miRNA:   3'- -CuaGCCUGGUUAGAUcGCCGU------UGCCG- -5'
13126 3' -53.1 NC_003401.1 + 44997 0.66 0.952626
Target:  5'- uGGUCGGAUUuuaaau-CGGCAAUGGCg -3'
miRNA:   3'- -CUAGCCUGGuuagaucGCCGUUGCCG- -5'
13126 3' -53.1 NC_003401.1 + 18411 0.66 0.953448
Target:  5'- cGGUCGGuuucCCAGg--GGUGGUcuCGGCg -3'
miRNA:   3'- -CUAGCCu---GGUUagaUCGCCGuuGCCG- -5'
13126 3' -53.1 NC_003401.1 + 103346 0.66 0.957413
Target:  5'- cGGUUGGACCAAagCUGGUGcGCuucAUGGa -3'
miRNA:   3'- -CUAGCCUGGUUa-GAUCGC-CGu--UGCCg -5'
13126 3' -53.1 NC_003401.1 + 44940 0.68 0.893431
Target:  5'- --cCGGaACCAGUaguGCGGCAA-GGCg -3'
miRNA:   3'- cuaGCC-UGGUUAgauCGCCGUUgCCG- -5'
13126 3' -53.1 NC_003401.1 + 128776 0.69 0.886483
Target:  5'- --cUGGACUAAg--GGCuGCAGCGGCc -3'
miRNA:   3'- cuaGCCUGGUUagaUCGcCGUUGCCG- -5'
13126 3' -53.1 NC_003401.1 + 70495 0.69 0.87188
Target:  5'- -uUCGGcaGCUAcgCUGcCGGCGACGGUu -3'
miRNA:   3'- cuAGCC--UGGUuaGAUcGCCGUUGCCG- -5'
13126 3' -53.1 NC_003401.1 + 119780 0.74 0.611809
Target:  5'- --aCGGccuccGCCAAUCUggccggaGGCGGCGcaGCGGCa -3'
miRNA:   3'- cuaGCC-----UGGUUAGA-------UCGCCGU--UGCCG- -5'
13126 3' -53.1 NC_003401.1 + 18531 0.74 0.644427
Target:  5'- cGAguggCaGACCucgAGUCUAGUGGaCAACGGCa -3'
miRNA:   3'- -CUa---GcCUGG---UUAGAUCGCC-GUUGCCG- -5'
13126 3' -53.1 NC_003401.1 + 125744 0.71 0.786365
Target:  5'- ---aGGcGCCAcugCUGGCGGCcucGACGGCg -3'
miRNA:   3'- cuagCC-UGGUua-GAUCGCCG---UUGCCG- -5'
13126 3' -53.1 NC_003401.1 + 23826 0.71 0.795725
Target:  5'- cAUUGGACg---CUGGCGGCAGCcaaugGGCg -3'
miRNA:   3'- cUAGCCUGguuaGAUCGCCGUUG-----CCG- -5'
13126 3' -53.1 NC_003401.1 + 84034 0.7 0.82283
Target:  5'- cGGagGGACCAA-CgugGGCaagggggcgGGCAGCGGCa -3'
miRNA:   3'- -CUagCCUGGUUaGa--UCG---------CCGUUGCCG- -5'
13126 3' -53.1 NC_003401.1 + 52423 0.7 0.839999
Target:  5'- -cUgGGGCCAGUgUAGUcaccaGGCGACGGa -3'
miRNA:   3'- cuAgCCUGGUUAgAUCG-----CCGUUGCCg -5'
13126 3' -53.1 NC_003401.1 + 41731 0.69 0.856368
Target:  5'- --aCGG-UCAcGUCU-GCGGCAugGGCg -3'
miRNA:   3'- cuaGCCuGGU-UAGAuCGCCGUugCCG- -5'
13126 3' -53.1 NC_003401.1 + 123411 0.69 0.859541
Target:  5'- gGAagGGACgAgccacuacgugguggGUgUGGUGGCAGCGGCc -3'
miRNA:   3'- -CUagCCUGgU---------------UAgAUCGCCGUUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.