miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13126 3' -53.1 NC_003401.1 + 48609 1.11 0.003575
Target:  5'- gGAUCGGACCAAUCUAGCGGCAACGGCc -3'
miRNA:   3'- -CUAGCCUGGUUAGAUCGCCGUUGCCG- -5'
13126 3' -53.1 NC_003401.1 + 112858 0.82 0.248229
Target:  5'- cGUCGGugCAGUCUagGGUGGCcACGGCc -3'
miRNA:   3'- cUAGCCugGUUAGA--UCGCCGuUGCCG- -5'
13126 3' -53.1 NC_003401.1 + 80175 0.77 0.460876
Target:  5'- -cUCGGGCC--UCUGG-GGUAGCGGCa -3'
miRNA:   3'- cuAGCCUGGuuAGAUCgCCGUUGCCG- -5'
13126 3' -53.1 NC_003401.1 + 10666 0.76 0.529902
Target:  5'- --aCGGACCAccaccgUGGCGGCAaccGCGGCa -3'
miRNA:   3'- cuaGCCUGGUuag---AUCGCCGU---UGCCG- -5'
13126 3' -53.1 NC_003401.1 + 119780 0.74 0.611809
Target:  5'- --aCGGccuccGCCAAUCUggccggaGGCGGCGcaGCGGCa -3'
miRNA:   3'- cuaGCC-----UGGUUAGA-------UCGCCGU--UGCCG- -5'
13126 3' -53.1 NC_003401.1 + 18531 0.74 0.644427
Target:  5'- cGAguggCaGACCucgAGUCUAGUGGaCAACGGCa -3'
miRNA:   3'- -CUa---GcCUGG---UUAGAUCGCC-GUUGCCG- -5'
13126 3' -53.1 NC_003401.1 + 105120 0.72 0.73756
Target:  5'- uGUCGGGCCAcuGUCUGuccauccacguuGCGGCcucugccccGCGGCg -3'
miRNA:   3'- cUAGCCUGGU--UAGAU------------CGCCGu--------UGCCG- -5'
13126 3' -53.1 NC_003401.1 + 132402 0.72 0.73756
Target:  5'- --cCGGGCgCAAgaUGGCGGCcGCGGCc -3'
miRNA:   3'- cuaGCCUG-GUUagAUCGCCGuUGCCG- -5'
13126 3' -53.1 NC_003401.1 + 125744 0.71 0.786365
Target:  5'- ---aGGcGCCAcugCUGGCGGCcucGACGGCg -3'
miRNA:   3'- cuagCC-UGGUua-GAUCGCCG---UUGCCG- -5'
13126 3' -53.1 NC_003401.1 + 23826 0.71 0.795725
Target:  5'- cAUUGGACg---CUGGCGGCAGCcaaugGGCg -3'
miRNA:   3'- cUAGCCUGguuaGAUCGCCGUUG-----CCG- -5'
13126 3' -53.1 NC_003401.1 + 106323 0.7 0.813967
Target:  5'- -uUUGG-CCAGUCUGGgGGguAUGGUc -3'
miRNA:   3'- cuAGCCuGGUUAGAUCgCCguUGCCG- -5'
13126 3' -53.1 NC_003401.1 + 84034 0.7 0.82283
Target:  5'- cGGagGGACCAA-CgugGGCaagggggcgGGCAGCGGCa -3'
miRNA:   3'- -CUagCCUGGUUaGa--UCG---------CCGUUGCCG- -5'
13126 3' -53.1 NC_003401.1 + 52423 0.7 0.839999
Target:  5'- -cUgGGGCCAGUgUAGUcaccaGGCGACGGa -3'
miRNA:   3'- cuAgCCUGGUUAgAUCG-----CCGUUGCCg -5'
13126 3' -53.1 NC_003401.1 + 18454 0.7 0.848287
Target:  5'- --aCGGGgCAGggc-GCGGCGGCGGCc -3'
miRNA:   3'- cuaGCCUgGUUagauCGCCGUUGCCG- -5'
13126 3' -53.1 NC_003401.1 + 41731 0.69 0.856368
Target:  5'- --aCGG-UCAcGUCU-GCGGCAugGGCg -3'
miRNA:   3'- cuaGCCuGGU-UAGAuCGCCGUugCCG- -5'
13126 3' -53.1 NC_003401.1 + 123411 0.69 0.859541
Target:  5'- gGAagGGACgAgccacuacgugguggGUgUGGUGGCAGCGGCc -3'
miRNA:   3'- -CUagCCUGgU---------------UAgAUCGCCGUUGCCG- -5'
13126 3' -53.1 NC_003401.1 + 70495 0.69 0.87188
Target:  5'- -uUCGGcaGCUAcgCUGcCGGCGACGGUu -3'
miRNA:   3'- cuAGCC--UGGUuaGAUcGCCGUUGCCG- -5'
13126 3' -53.1 NC_003401.1 + 30335 0.69 0.87188
Target:  5'- ---gGGugCGuAUCUAGCGGCGcuggaGGCa -3'
miRNA:   3'- cuagCCugGU-UAGAUCGCCGUug---CCG- -5'
13126 3' -53.1 NC_003401.1 + 132608 0.69 0.878567
Target:  5'- --cCGGGCCcggCggAGCGGCAcccggggGCGGCc -3'
miRNA:   3'- cuaGCCUGGuuaGa-UCGCCGU-------UGCCG- -5'
13126 3' -53.1 NC_003401.1 + 128776 0.69 0.886483
Target:  5'- --cUGGACUAAg--GGCuGCAGCGGCc -3'
miRNA:   3'- cuaGCCUGGUUagaUCGcCGUUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.