miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13127 5' -59.9 NC_003401.1 + 27594 0.66 0.693061
Target:  5'- aGGGGCGGGcacgcgccaGCGCGGGGGgcaGAGGc- -3'
miRNA:   3'- aUUCCGUCCc--------CGUGCUCCCa--CUCCag -5'
13127 5' -59.9 NC_003401.1 + 115677 0.66 0.676895
Target:  5'- -cGGGUGGGGGCGgcuCGGcuccgggguggcuccGGGUGGGGg- -3'
miRNA:   3'- auUCCGUCCCCGU---GCU---------------CCCACUCCag -5'
13127 5' -59.9 NC_003401.1 + 115804 0.66 0.676895
Target:  5'- -cGGGUGGGGGCGgcuCGGcuccgggguggcuccGGGUGGGGg- -3'
miRNA:   3'- auUCCGUCCCCGU---GCU---------------CCCACUCCag -5'
13127 5' -59.9 NC_003401.1 + 115868 0.66 0.676895
Target:  5'- -cGGGUGGGGGCGgcuCGGcuccgggguggcuccGGGUGGGGg- -3'
miRNA:   3'- auUCCGUCCCCGU---GCU---------------CCCACUCCag -5'
13127 5' -59.9 NC_003401.1 + 115932 0.66 0.676895
Target:  5'- -cGGGUGGGGGCGgcuCGGcuccgggguggcuccGGGUGGGGg- -3'
miRNA:   3'- auUCCGUCCCCGU---GCU---------------CCCACUCCag -5'
13127 5' -59.9 NC_003401.1 + 115996 0.66 0.676895
Target:  5'- -cGGGUGGGGGCGgcuCGGcuccgggguggcuccGGGUGGGGg- -3'
miRNA:   3'- auUCCGUCCCCGU---GCU---------------CCCACUCCag -5'
13127 5' -59.9 NC_003401.1 + 116060 0.66 0.676895
Target:  5'- -cGGGUGGGGGCGgcuCGGcuccgggguggcuccGGGUGGGGg- -3'
miRNA:   3'- auUCCGUCCCCGU---GCU---------------CCCACUCCag -5'
13127 5' -59.9 NC_003401.1 + 116124 0.66 0.676895
Target:  5'- -cGGGUGGGGGCGgcuCGGcuccgggguggcuccGGGUGGGGg- -3'
miRNA:   3'- auUCCGUCCCCGU---GCU---------------CCCACUCCag -5'
13127 5' -59.9 NC_003401.1 + 116188 0.66 0.676895
Target:  5'- -cGGGUGGGGGCGgcuCGGcuccgggguggcuccGGGUGGGGg- -3'
miRNA:   3'- auUCCGUCCCCGU---GCU---------------CCCACUCCag -5'
13127 5' -59.9 NC_003401.1 + 115613 0.66 0.676895
Target:  5'- -cGGGUGGGGGCGgcuCGGcuccgggguggcuccGGGUGGGGg- -3'
miRNA:   3'- auUCCGUCCCCGU---GCU---------------CCCACUCCag -5'
13127 5' -59.9 NC_003401.1 + 115549 0.66 0.676895
Target:  5'- -cGGGUGGGGGCGgcuCGGcuccgggguggcuccGGGUGGGGg- -3'
miRNA:   3'- auUCCGUCCCCGU---GCU---------------CCCACUCCag -5'
13127 5' -59.9 NC_003401.1 + 115485 0.66 0.676895
Target:  5'- -cGGGUGGGGGCGgcuCGGcuccgggguggcuccGGGUGGGGg- -3'
miRNA:   3'- auUCCGUCCCCGU---GCU---------------CCCACUCCag -5'
13127 5' -59.9 NC_003401.1 + 116252 0.66 0.676895
Target:  5'- -cGGGUGGGGGCGgcuCGGcuccgggguggcuccGGGUGGGGg- -3'
miRNA:   3'- auUCCGUCCCCGU---GCU---------------CCCACUCCag -5'
13127 5' -59.9 NC_003401.1 + 115293 0.66 0.676895
Target:  5'- -cGGGUGGGGGCGgcuCGGcuccgggguggcuccGGGUGGGGg- -3'
miRNA:   3'- auUCCGUCCCCGU---GCU---------------CCCACUCCag -5'
13127 5' -59.9 NC_003401.1 + 115357 0.66 0.676895
Target:  5'- -cGGGUGGGGGCGgcuCGGcuccgggguggcuccGGGUGGGGg- -3'
miRNA:   3'- auUCCGUCCCCGU---GCU---------------CCCACUCCag -5'
13127 5' -59.9 NC_003401.1 + 115421 0.66 0.676895
Target:  5'- -cGGGUGGGGGCGgcuCGGcuccgggguggcuccGGGUGGGGg- -3'
miRNA:   3'- auUCCGUCCCCGU---GCU---------------CCCACUCCag -5'
13127 5' -59.9 NC_003401.1 + 115741 0.66 0.66979
Target:  5'- -cGGGUGGGGGCGgcuCGGcuccggggugcuccGGGUGGGGg- -3'
miRNA:   3'- auUCCGUCCCCGU---GCU--------------CCCACUCCag -5'
13127 5' -59.9 NC_003401.1 + 117931 0.66 0.652481
Target:  5'- gAGGGCGGcGGGguCGc-GGcGAGGUCa -3'
miRNA:   3'- aUUCCGUC-CCCguGCucCCaCUCCAG- -5'
13127 5' -59.9 NC_003401.1 + 115091 0.67 0.621845
Target:  5'- --cGGUGGGGuGCACGucccccGGUGGGGUg -3'
miRNA:   3'- auuCCGUCCC-CGUGCuc----CCACUCCAg -5'
13127 5' -59.9 NC_003401.1 + 21406 0.68 0.550966
Target:  5'- uUGGGGCggaguacagGGGGGCcgacgccaacuACGAGGGUcagGGGGUg -3'
miRNA:   3'- -AUUCCG---------UCCCCG-----------UGCUCCCA---CUCCAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.