Results 1 - 20 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13130 | 5' | -53.6 | NC_003401.1 | + | 13645 | 0.67 | 0.936697 |
Target: 5'- --aGAGUCCguucgggGGCAUGCucauGAUCCUGGu -3' miRNA: 3'- acgCUCAGG-------CCGUAUGuu--UUGGGGCC- -5' |
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13130 | 5' | -53.6 | NC_003401.1 | + | 17464 | 0.69 | 0.882958 |
Target: 5'- gGCGGGUgaGGUugACGAAgcugaaucuACCCCGGu -3' miRNA: 3'- aCGCUCAggCCGuaUGUUU---------UGGGGCC- -5' |
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13130 | 5' | -53.6 | NC_003401.1 | + | 19597 | 0.67 | 0.932146 |
Target: 5'- cGCG-GUUCGGUGgcccgGCGAAACUgCGGc -3' miRNA: 3'- aCGCuCAGGCCGUa----UGUUUUGGgGCC- -5' |
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13130 | 5' | -53.6 | NC_003401.1 | + | 20147 | 0.68 | 0.915531 |
Target: 5'- gUGCGugcGUUgGGaggGCAGAGcCCCCGGg -3' miRNA: 3'- -ACGCu--CAGgCCguaUGUUUU-GGGGCC- -5' |
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13130 | 5' | -53.6 | NC_003401.1 | + | 20363 | 0.66 | 0.96375 |
Target: 5'- cGCGGGgCCGaGUGUAUGAAcgccaugguucgcggGCUCCGGg -3' miRNA: 3'- aCGCUCaGGC-CGUAUGUUU---------------UGGGGCC- -5' |
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13130 | 5' | -53.6 | NC_003401.1 | + | 21005 | 0.66 | 0.954925 |
Target: 5'- gGCGuAG-CUGGCGauguuaaACGGGACCCCGa -3' miRNA: 3'- aCGC-UCaGGCCGUa------UGUUUUGGGGCc -5' |
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13130 | 5' | -53.6 | NC_003401.1 | + | 22481 | 0.68 | 0.915531 |
Target: 5'- cGCGGGUCCGcuCAUG--GAGCCCauaGGa -3' miRNA: 3'- aCGCUCAGGCc-GUAUguUUUGGGg--CC- -5' |
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13130 | 5' | -53.6 | NC_003401.1 | + | 22746 | 0.77 | 0.459718 |
Target: 5'- uUGCGAGUCCcaaaacgGGCGUgucuaacuACGGucGCCCCGGg -3' miRNA: 3'- -ACGCUCAGG-------CCGUA--------UGUUu-UGGGGCC- -5' |
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13130 | 5' | -53.6 | NC_003401.1 | + | 23435 | 0.68 | 0.896705 |
Target: 5'- cGCGGGUuaGcCGUACc-GACCCCGGc -3' miRNA: 3'- aCGCUCAggCcGUAUGuuUUGGGGCC- -5' |
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13130 | 5' | -53.6 | NC_003401.1 | + | 26747 | 0.66 | 0.950853 |
Target: 5'- cGCG-GUgCGGCAUACGGuuuaacgugcAACUgCCGGu -3' miRNA: 3'- aCGCuCAgGCCGUAUGUU----------UUGG-GGCC- -5' |
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13130 | 5' | -53.6 | NC_003401.1 | + | 27692 | 0.69 | 0.875736 |
Target: 5'- gGCGAGaCCGGCGUGguGGcUCgCCGGc -3' miRNA: 3'- aCGCUCaGGCCGUAUguUUuGG-GGCC- -5' |
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13130 | 5' | -53.6 | NC_003401.1 | + | 27717 | 0.68 | 0.889949 |
Target: 5'- aUGCGgacAGUCCGcGCG-----GGCCCCGGu -3' miRNA: 3'- -ACGC---UCAGGC-CGUauguuUUGGGGCC- -5' |
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13130 | 5' | -53.6 | NC_003401.1 | + | 28144 | 0.66 | 0.96237 |
Target: 5'- gGCGAGgaggUCGGCAUACAcaaGGACgUCa- -3' miRNA: 3'- aCGCUCa---GGCCGUAUGU---UUUGgGGcc -5' |
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13130 | 5' | -53.6 | NC_003401.1 | + | 29775 | 0.67 | 0.941988 |
Target: 5'- cGgGAuUCCGGCGUGgGAuuuugcguccgcGGCUCCGGc -3' miRNA: 3'- aCgCUcAGGCCGUAUgUU------------UUGGGGCC- -5' |
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13130 | 5' | -53.6 | NC_003401.1 | + | 39386 | 0.66 | 0.950853 |
Target: 5'- cGCGuGUCCugcuacgguGGCA-GCGAAcGCCCCGu -3' miRNA: 3'- aCGCuCAGG---------CCGUaUGUUU-UGGGGCc -5' |
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13130 | 5' | -53.6 | NC_003401.1 | + | 42814 | 0.67 | 0.926855 |
Target: 5'- uUGaGGGUCCuGUccugGUACGAGuCCCCGGg -3' miRNA: 3'- -ACgCUCAGGcCG----UAUGUUUuGGGGCC- -5' |
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13130 | 5' | -53.6 | NC_003401.1 | + | 44704 | 0.66 | 0.96237 |
Target: 5'- -cCGGGUCUGGUGUuuGCGGuuAACCCCa- -3' miRNA: 3'- acGCUCAGGCCGUA--UGUU--UUGGGGcc -5' |
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13130 | 5' | -53.6 | NC_003401.1 | + | 50089 | 0.67 | 0.93719 |
Target: 5'- cGCGAcuggcuaaaUCCGGCAgGCGAAugaggGCCCaCGGu -3' miRNA: 3'- aCGCUc--------AGGCCGUaUGUUU-----UGGG-GCC- -5' |
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13130 | 5' | -53.6 | NC_003401.1 | + | 58184 | 1.1 | 0.003884 |
Target: 5'- uUGCGAGUCCGGCAUACAAAACCCCGGc -3' miRNA: 3'- -ACGCUCAGGCCGUAUGUUUUGGGGCC- -5' |
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13130 | 5' | -53.6 | NC_003401.1 | + | 64237 | 0.67 | 0.926855 |
Target: 5'- gGCG-GUaCCGGCAaccccgUACGGGACCCgGc -3' miRNA: 3'- aCGCuCA-GGCCGU------AUGUUUUGGGgCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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