miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13130 5' -53.6 NC_003401.1 + 133700 0.69 0.868289
Target:  5'- gGCG-GUCCgGGCGggGgAGAGgCCCGGg -3'
miRNA:   3'- aCGCuCAGG-CCGUa-UgUUUUgGGGCC- -5'
13130 5' -53.6 NC_003401.1 + 132723 0.68 0.892
Target:  5'- cGCGGccGcCCGGCAUcgggagccgcgcgccGCGgcuugugGGGCCCCGGg -3'
miRNA:   3'- aCGCU--CaGGCCGUA---------------UGU-------UUUGGGGCC- -5'
13130 5' -53.6 NC_003401.1 + 132690 0.74 0.599506
Target:  5'- gGCGGGgcCCGGCGcgggGCGcgaccgaGGGCCCCGGg -3'
miRNA:   3'- aCGCUCa-GGCCGUa---UGU-------UUUGGGGCC- -5'
13130 5' -53.6 NC_003401.1 + 132610 0.68 0.896705
Target:  5'- gGcCGGGcCCGGCGgaGCGGcacccgggggcGGCCCCGGc -3'
miRNA:   3'- aC-GCUCaGGCCGUa-UGUU-----------UUGGGGCC- -5'
13130 5' -53.6 NC_003401.1 + 132497 0.67 0.932146
Target:  5'- cGCGGGcccgggCCGGCGggGCGGAGggCCGGg -3'
miRNA:   3'- aCGCUCa-----GGCCGUa-UGUUUUggGGCC- -5'
13130 5' -53.6 NC_003401.1 + 132464 0.68 0.888569
Target:  5'- cGcCGGGcCCGGCcgACucccgggagcGCCCCGGu -3'
miRNA:   3'- aC-GCUCaGGCCGuaUGuuu-------UGGGGCC- -5'
13130 5' -53.6 NC_003401.1 + 132436 0.7 0.810388
Target:  5'- cGCGGGcCCGGgGggcgcGCGGGggacccucGCCCCGGg -3'
miRNA:   3'- aCGCUCaGGCCgUa----UGUUU--------UGGGGCC- -5'
13130 5' -53.6 NC_003401.1 + 132220 0.66 0.965752
Target:  5'- gGCGc--CCGGCcgGCGccGCCgCCGGg -3'
miRNA:   3'- aCGCucaGGCCGuaUGUuuUGG-GGCC- -5'
13130 5' -53.6 NC_003401.1 + 126263 0.71 0.773447
Target:  5'- cUGC-AGUggCUGGUGUcCGAAACCCCGGg -3'
miRNA:   3'- -ACGcUCA--GGCCGUAuGUUUUGGGGCC- -5'
13130 5' -53.6 NC_003401.1 + 123361 0.66 0.96237
Target:  5'- gGCG-GUuuGGCcgcgGCGcgGCCCCuGGa -3'
miRNA:   3'- aCGCuCAggCCGua--UGUuuUGGGG-CC- -5'
13130 5' -53.6 NC_003401.1 + 121768 0.66 0.950853
Target:  5'- gGCGA---CGGCGUugGAGAUCCCa- -3'
miRNA:   3'- aCGCUcagGCCGUAugUUUUGGGGcc -5'
13130 5' -53.6 NC_003401.1 + 115212 0.69 0.875736
Target:  5'- gUGCaAGUCCcccgguGGgGUGCAAGucCCCCGGu -3'
miRNA:   3'- -ACGcUCAGG------CCgUAUGUUUu-GGGGCC- -5'
13130 5' -53.6 NC_003401.1 + 115155 0.69 0.875736
Target:  5'- gUGCaAGUCCcccgguGGgGUGCAAGucCCCCGGu -3'
miRNA:   3'- -ACGcUCAGG------CCgUAUGUUUu-GGGGCC- -5'
13130 5' -53.6 NC_003401.1 + 115117 0.69 0.875736
Target:  5'- gUGCaAGUCCcccgguGGgGUGCAAGucCCCCGGu -3'
miRNA:   3'- -ACGcUCAGG------CCgUAUGUUUu-GGGGCC- -5'
13130 5' -53.6 NC_003401.1 + 115041 0.69 0.875736
Target:  5'- gUGCaAGUCCcccgguGGgGUGCAAGucCCCCGGu -3'
miRNA:   3'- -ACGcUCAGG------CCgUAUGUUUu-GGGGCC- -5'
13130 5' -53.6 NC_003401.1 + 115003 0.69 0.875736
Target:  5'- gUGCaAGUCCcccgguGGgGUGCAAGucCCCCGGu -3'
miRNA:   3'- -ACGcUCAGG------CCgUAUGUUUu-GGGGCC- -5'
13130 5' -53.6 NC_003401.1 + 114965 0.69 0.875736
Target:  5'- gUGCaAGUCCcccgguGGgGUGCAAGucCCCCGGu -3'
miRNA:   3'- -ACGcUCAGG------CCgUAUGUUUu-GGGGCC- -5'
13130 5' -53.6 NC_003401.1 + 114927 0.69 0.875736
Target:  5'- gUGCaGGUCCcccgguGGgGUGCAAGucCCCCGGu -3'
miRNA:   3'- -ACGcUCAGG------CCgUAUGUUUu-GGGGCC- -5'
13130 5' -53.6 NC_003401.1 + 114870 0.69 0.875736
Target:  5'- gUGCaAGUCCcccgguGGgGUGCAAGucCCCCGGu -3'
miRNA:   3'- -ACGcUCAGG------CCgUAUGUUUu-GGGGCC- -5'
13130 5' -53.6 NC_003401.1 + 113156 0.68 0.915531
Target:  5'- aGCGGGUCaccaGGCAccUAAAuCgCCCGGg -3'
miRNA:   3'- aCGCUCAGg---CCGUauGUUUuG-GGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.