miRNA display CGI


Results 1 - 20 of 47 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13130 5' -53.6 NC_003401.1 + 58184 1.1 0.003884
Target:  5'- uUGCGAGUCCGGCAUACAAAACCCCGGc -3'
miRNA:   3'- -ACGCUCAGGCCGUAUGUUUUGGGGCC- -5'
13130 5' -53.6 NC_003401.1 + 50089 0.67 0.93719
Target:  5'- cGCGAcuggcuaaaUCCGGCAgGCGAAugaggGCCCaCGGu -3'
miRNA:   3'- aCGCUc--------AGGCCGUaUGUUU-----UGGG-GCC- -5'
13130 5' -53.6 NC_003401.1 + 39386 0.66 0.950853
Target:  5'- cGCGuGUCCugcuacgguGGCA-GCGAAcGCCCCGu -3'
miRNA:   3'- aCGCuCAGG---------CCGUaUGUUU-UGGGGCc -5'
13130 5' -53.6 NC_003401.1 + 20363 0.66 0.96375
Target:  5'- cGCGGGgCCGaGUGUAUGAAcgccaugguucgcggGCUCCGGg -3'
miRNA:   3'- aCGCUCaGGC-CGUAUGUUU---------------UGGGGCC- -5'
13130 5' -53.6 NC_003401.1 + 132436 0.7 0.810388
Target:  5'- cGCGGGcCCGGgGggcgcGCGGGggacccucGCCCCGGg -3'
miRNA:   3'- aCGCUCaGGCCgUa----UGUUU--------UGGGGCC- -5'
13130 5' -53.6 NC_003401.1 + 69747 0.7 0.819227
Target:  5'- gGCgGAGagCCGGCcgccAUGCGGGACUCUGGa -3'
miRNA:   3'- aCG-CUCa-GGCCG----UAUGUUUUGGGGCC- -5'
13130 5' -53.6 NC_003401.1 + 133700 0.69 0.868289
Target:  5'- gGCG-GUCCgGGCGggGgAGAGgCCCGGg -3'
miRNA:   3'- aCGCuCAGG-CCGUa-UgUUUUgGGGCC- -5'
13130 5' -53.6 NC_003401.1 + 106870 0.69 0.875736
Target:  5'- uUGCGGGUuuGGCGgguuCGguGAGCaCUCGGg -3'
miRNA:   3'- -ACGCUCAggCCGUau--GU--UUUG-GGGCC- -5'
13130 5' -53.6 NC_003401.1 + 132723 0.68 0.892
Target:  5'- cGCGGccGcCCGGCAUcgggagccgcgcgccGCGgcuugugGGGCCCCGGg -3'
miRNA:   3'- aCGCU--CaGGCCGUA---------------UGU-------UUUGGGGCC- -5'
13130 5' -53.6 NC_003401.1 + 132497 0.67 0.932146
Target:  5'- cGCGGGcccgggCCGGCGggGCGGAGggCCGGg -3'
miRNA:   3'- aCGCUCa-----GGCCGUa-UGUUUUggGGCC- -5'
13130 5' -53.6 NC_003401.1 + 23435 0.68 0.896705
Target:  5'- cGCGGGUuaGcCGUACc-GACCCCGGc -3'
miRNA:   3'- aCGCUCAggCcGUAUGuuUUGGGGCC- -5'
13130 5' -53.6 NC_003401.1 + 27717 0.68 0.889949
Target:  5'- aUGCGgacAGUCCGcGCG-----GGCCCCGGu -3'
miRNA:   3'- -ACGC---UCAGGC-CGUauguuUUGGGGCC- -5'
13130 5' -53.6 NC_003401.1 + 107897 0.74 0.625497
Target:  5'- -cCGGGUCCGGCucggccgccccgaGCGuuGCCCCGGu -3'
miRNA:   3'- acGCUCAGGCCGua-----------UGUuuUGGGGCC- -5'
13130 5' -53.6 NC_003401.1 + 20147 0.68 0.915531
Target:  5'- gUGCGugcGUUgGGaggGCAGAGcCCCCGGg -3'
miRNA:   3'- -ACGCu--CAGgCCguaUGUUUU-GGGGCC- -5'
13130 5' -53.6 NC_003401.1 + 126263 0.71 0.773447
Target:  5'- cUGC-AGUggCUGGUGUcCGAAACCCCGGg -3'
miRNA:   3'- -ACGcUCA--GGCCGUAuGUUUUGGGGCC- -5'
13130 5' -53.6 NC_003401.1 + 17464 0.69 0.882958
Target:  5'- gGCGGGUgaGGUugACGAAgcugaaucuACCCCGGu -3'
miRNA:   3'- aCGCUCAggCCGuaUGUUU---------UGGGGCC- -5'
13130 5' -53.6 NC_003401.1 + 42814 0.67 0.926855
Target:  5'- uUGaGGGUCCuGUccugGUACGAGuCCCCGGg -3'
miRNA:   3'- -ACgCUCAGGcCG----UAUGUUUuGGGGCC- -5'
13130 5' -53.6 NC_003401.1 + 98770 0.66 0.950853
Target:  5'- uUGCGAuaaCCugGGCGgacACGGGACCCUGGu -3'
miRNA:   3'- -ACGCUca-GG--CCGUa--UGUUUUGGGGCC- -5'
13130 5' -53.6 NC_003401.1 + 100108 0.7 0.801381
Target:  5'- cUGCGAG-CCGGCGUAUuguccGAACCUgcaguCGGc -3'
miRNA:   3'- -ACGCUCaGGCCGUAUGu----UUUGGG-----GCC- -5'
13130 5' -53.6 NC_003401.1 + 73378 0.69 0.852743
Target:  5'- --gGAGUCaaaGGCGUACGGAACCguaUGGg -3'
miRNA:   3'- acgCUCAGg--CCGUAUGUUUUGGg--GCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.