Results 21 - 38 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13136 | 3' | -60.4 | NC_003401.1 | + | 89621 | 0.71 | 0.408842 |
Target: 5'- aACCgUCGCCAaccUGGCgGCCCUGGCauaUACg -3' miRNA: 3'- -UGGaAGUGGU---ACUGgCGGGGCCG---GUG- -5' |
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13136 | 3' | -60.4 | NC_003401.1 | + | 92958 | 0.67 | 0.587202 |
Target: 5'- gACgUUCACCAUGGuCaCGUCUCGGCUc- -3' miRNA: 3'- -UGgAAGUGGUACU-G-GCGGGGCCGGug -5' |
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13136 | 3' | -60.4 | NC_003401.1 | + | 105669 | 0.67 | 0.617342 |
Target: 5'- cGCCgucuaUCGUCGUGAgCGCCCaggugaCGGCCGCc -3' miRNA: 3'- -UGGa----AGUGGUACUgGCGGG------GCCGGUG- -5' |
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13136 | 3' | -60.4 | NC_003401.1 | + | 108831 | 0.66 | 0.647578 |
Target: 5'- aACUggCGCC--GACCGUCCCGuGCgGCa -3' miRNA: 3'- -UGGaaGUGGuaCUGGCGGGGC-CGgUG- -5' |
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13136 | 3' | -60.4 | NC_003401.1 | + | 117767 | 0.66 | 0.697623 |
Target: 5'- aACCcgCggcgGCCAUGGUCGCCgCGGCCGu -3' miRNA: 3'- -UGGaaG----UGGUACUGGCGGgGCCGGUg -5' |
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13136 | 3' | -60.4 | NC_003401.1 | + | 118596 | 0.66 | 0.677706 |
Target: 5'- cACCUUUgGCCGgccGGCCucugCCCGGCCACc -3' miRNA: 3'- -UGGAAG-UGGUa--CUGGcg--GGGCCGGUG- -5' |
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13136 | 3' | -60.4 | NC_003401.1 | + | 119959 | 0.71 | 0.392034 |
Target: 5'- aGCCUcggUGCCGcUGcGCCGCCuCCGGCCAg -3' miRNA: 3'- -UGGAa--GUGGU-AC-UGGCGG-GGCCGGUg -5' |
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13136 | 3' | -60.4 | NC_003401.1 | + | 121516 | 0.72 | 0.352032 |
Target: 5'- cACCc-CACCG-GGCCGUCUCGGCCAg -3' miRNA: 3'- -UGGaaGUGGUaCUGGCGGGGCCGGUg -5' |
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13136 | 3' | -60.4 | NC_003401.1 | + | 125905 | 0.72 | 0.352032 |
Target: 5'- cGCCgucgaggcCGCCAgcagUGGCCGCCuuGGUCACc -3' miRNA: 3'- -UGGaa------GUGGU----ACUGGCGGggCCGGUG- -5' |
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13136 | 3' | -60.4 | NC_003401.1 | + | 128521 | 0.69 | 0.507699 |
Target: 5'- cCCgggCACCuUGGCCGCCCUgacacuuGGCaCACu -3' miRNA: 3'- uGGaa-GUGGuACUGGCGGGG-------CCG-GUG- -5' |
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13136 | 3' | -60.4 | NC_003401.1 | + | 132227 | 0.68 | 0.547485 |
Target: 5'- gGCCggCGCCGccGCCggGCCgCGGCCGCc -3' miRNA: 3'- -UGGaaGUGGUacUGG--CGGgGCCGGUG- -5' |
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13136 | 3' | -60.4 | NC_003401.1 | + | 132363 | 0.66 | 0.697623 |
Target: 5'- gGCCgggCGCCu---CCgGgCCCGGCCGCu -3' miRNA: 3'- -UGGaa-GUGGuacuGG-CgGGGCCGGUG- -5' |
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13136 | 3' | -60.4 | NC_003401.1 | + | 132364 | 0.79 | 0.125015 |
Target: 5'- gGCCgcCGCCcccGGCCGCCCCGcGCCGCg -3' miRNA: 3'- -UGGaaGUGGua-CUGGCGGGGC-CGGUG- -5' |
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13136 | 3' | -60.4 | NC_003401.1 | + | 132412 | 0.66 | 0.667688 |
Target: 5'- gACCcUCGCCccgggcgcaagAUGGCgGCCgCGGCCcgGCg -3' miRNA: 3'- -UGGaAGUGG-----------UACUGgCGGgGCCGG--UG- -5' |
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13136 | 3' | -60.4 | NC_003401.1 | + | 132418 | 0.66 | 0.647578 |
Target: 5'- gGCCgggggUCccgcgggggGCCggGGCCGCCCCcggguGCCGCu -3' miRNA: 3'- -UGGa----AG---------UGGuaCUGGCGGGGc----CGGUG- -5' |
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13136 | 3' | -60.4 | NC_003401.1 | + | 132474 | 0.67 | 0.637501 |
Target: 5'- gGCCgacUC-CCggGAgCGCCCCGGuCCGg -3' miRNA: 3'- -UGGa--AGuGGuaCUgGCGGGGCC-GGUg -5' |
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13136 | 3' | -60.4 | NC_003401.1 | + | 132594 | 0.67 | 0.637501 |
Target: 5'- -gCggCACCcgggGGCgGCCCCGGCCc- -3' miRNA: 3'- ugGaaGUGGua--CUGgCGGGGCCGGug -5' |
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13136 | 3' | -60.4 | NC_003401.1 | + | 133544 | 0.7 | 0.443769 |
Target: 5'- gGCCUcuccccCGCCcgGACCGCcgggcaCCCGGCC-Ca -3' miRNA: 3'- -UGGAa-----GUGGuaCUGGCG------GGGCCGGuG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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