miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13155 3' -55.1 NC_003401.1 + 117644 0.66 0.919607
Target:  5'- uGACGg--CU---UGGCCGGCCAAugggaaacgucccuGCCg -3'
miRNA:   3'- -CUGCaaaGGguaACCGGCCGGUU--------------CGG- -5'
13155 3' -55.1 NC_003401.1 + 126322 0.66 0.915531
Target:  5'- aGAUGg--CCC--UGGCCGGUaaccgAGGCCu -3'
miRNA:   3'- -CUGCaaaGGGuaACCGGCCGg----UUCGG- -5'
13155 3' -55.1 NC_003401.1 + 117710 0.66 0.915531
Target:  5'- -uCGgUUgCgAUUGGCCGGCCGuucuGUCa -3'
miRNA:   3'- cuGCaAAgGgUAACCGGCCGGUu---CGG- -5'
13155 3' -55.1 NC_003401.1 + 119512 0.66 0.915531
Target:  5'- gGGCGUaUCgUCGgacgccGGCCGGUCAaaaAGCCa -3'
miRNA:   3'- -CUGCAaAG-GGUaa----CCGGCCGGU---UCGG- -5'
13155 3' -55.1 NC_003401.1 + 105787 0.66 0.903223
Target:  5'- cGGCGUUggaCCCGcgGGCCaaagguGGUCAGGUg -3'
miRNA:   3'- -CUGCAAa--GGGUaaCCGG------CCGGUUCGg -5'
13155 3' -55.1 NC_003401.1 + 102471 0.66 0.896705
Target:  5'- cGGCGUcUCCCAguauUUGGUCGa--GAGCCu -3'
miRNA:   3'- -CUGCAaAGGGU----AACCGGCcggUUCGG- -5'
13155 3' -55.1 NC_003401.1 + 32190 0.66 0.889949
Target:  5'- uGAUGUgUUCCCcgUGGUagauacgcaCGGCUuaauGAGCCc -3'
miRNA:   3'- -CUGCA-AAGGGuaACCG---------GCCGG----UUCGG- -5'
13155 3' -55.1 NC_003401.1 + 120393 0.66 0.889949
Target:  5'- gGACGgggucaauggUCCCGgugGGCacugGGCCAacagaAGCCa -3'
miRNA:   3'- -CUGCaa--------AGGGUaa-CCGg---CCGGU-----UCGG- -5'
13155 3' -55.1 NC_003401.1 + 44016 0.66 0.889949
Target:  5'- gGACGUggacCCCGUUgGGUCGaGCUcAGCUa -3'
miRNA:   3'- -CUGCAaa--GGGUAA-CCGGC-CGGuUCGG- -5'
13155 3' -55.1 NC_003401.1 + 91619 0.66 0.889949
Target:  5'- cGACGUUcaaCCCGUUGuuuuaaacGCCGcGCCAugGGCa -3'
miRNA:   3'- -CUGCAAa--GGGUAAC--------CGGC-CGGU--UCGg -5'
13155 3' -55.1 NC_003401.1 + 18416 0.67 0.875736
Target:  5'- --gGUUUCCCAggggUGGUcuCGGCgGAGUg -3'
miRNA:   3'- cugCAAAGGGUa---ACCG--GCCGgUUCGg -5'
13155 3' -55.1 NC_003401.1 + 56184 0.67 0.875736
Target:  5'- uGCGUgggCCAUccUGGCCauauucaaGGCCAAGCg -3'
miRNA:   3'- cUGCAaagGGUA--ACCGG--------CCGGUUCGg -5'
13155 3' -55.1 NC_003401.1 + 125132 0.67 0.875736
Target:  5'- uGACaGUUUCCCcgUGggcGCUGGCCuuccAGUCc -3'
miRNA:   3'- -CUG-CAAAGGGuaAC---CGGCCGGu---UCGG- -5'
13155 3' -55.1 NC_003401.1 + 31658 0.67 0.868289
Target:  5'- -uCGUgUCCUcUUGGCgCGGCUcuGCCu -3'
miRNA:   3'- cuGCAaAGGGuAACCG-GCCGGuuCGG- -5'
13155 3' -55.1 NC_003401.1 + 13156 0.67 0.868289
Target:  5'- uGGCGUcgCCCAcgaacUUGGCCGacaCC-GGCCg -3'
miRNA:   3'- -CUGCAaaGGGU-----AACCGGCc--GGuUCGG- -5'
13155 3' -55.1 NC_003401.1 + 125414 0.67 0.860623
Target:  5'- -uCGUccUCCCAg-GGUgGGCCAacGGCCg -3'
miRNA:   3'- cuGCAa-AGGGUaaCCGgCCGGU--UCGG- -5'
13155 3' -55.1 NC_003401.1 + 39138 0.67 0.852743
Target:  5'- aGACGUUUUCaagaaucucauUAUUGG-UGGCCAGGCa -3'
miRNA:   3'- -CUGCAAAGG-----------GUAACCgGCCGGUUCGg -5'
13155 3' -55.1 NC_003401.1 + 107908 0.67 0.852743
Target:  5'- gGGCGUUUugUCCg--GGuCCGGCUcGGCCg -3'
miRNA:   3'- -CUGCAAA--GGGuaaCC-GGCCGGuUCGG- -5'
13155 3' -55.1 NC_003401.1 + 119912 0.68 0.844656
Target:  5'- cGGCGUUUcggccgcaaCCCucgcGGCCGccGCCGAGUCg -3'
miRNA:   3'- -CUGCAAA---------GGGuaa-CCGGC--CGGUUCGG- -5'
13155 3' -55.1 NC_003401.1 + 127121 0.68 0.844656
Target:  5'- aGugGgacCCCug-GGCCGGCCGcuGUCa -3'
miRNA:   3'- -CugCaaaGGGuaaCCGGCCGGUu-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.