miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13155 5' -58.3 NC_003401.1 + 20630 0.66 0.820541
Target:  5'- --uACCUGUcguguugGGCGGCCAgcccuacgcUGG-CGCCu -3'
miRNA:   3'- gauUGGGCG-------CCGCCGGUa--------ACCaGCGG- -5'
13155 5' -58.3 NC_003401.1 + 103287 0.66 0.81285
Target:  5'- ----aCgGCGGUGGCCucggacggcGGUCGCUc -3'
miRNA:   3'- gauugGgCGCCGCCGGuaa------CCAGCGG- -5'
13155 5' -58.3 NC_003401.1 + 126959 0.66 0.81285
Target:  5'- uCUGACa-GCGGcCGGCCcAggGGUC-CCa -3'
miRNA:   3'- -GAUUGggCGCC-GCCGG-UaaCCAGcGG- -5'
13155 5' -58.3 NC_003401.1 + 16836 0.66 0.811123
Target:  5'- --cGCgUGCGGCGGCCGcUUGcacaacagccgCGCCg -3'
miRNA:   3'- gauUGgGCGCCGCCGGU-AACca---------GCGG- -5'
13155 5' -58.3 NC_003401.1 + 8907 0.66 0.804152
Target:  5'- --cGCCCuGUGGCGGCgAccGGcugacgCGCCg -3'
miRNA:   3'- gauUGGG-CGCCGCCGgUaaCCa-----GCGG- -5'
13155 5' -58.3 NC_003401.1 + 14891 0.66 0.804152
Target:  5'- ---cCCCGCcuGGCGGCCAga-GaUGCCa -3'
miRNA:   3'- gauuGGGCG--CCGCCGGUaacCaGCGG- -5'
13155 5' -58.3 NC_003401.1 + 118379 0.66 0.804152
Target:  5'- -cGGCCUGCGGCGacgcugacGCCGgcgGGUuCGaCCc -3'
miRNA:   3'- gaUUGGGCGCCGC--------CGGUaa-CCA-GC-GG- -5'
13155 5' -58.3 NC_003401.1 + 31023 0.66 0.804152
Target:  5'- -cGGCCCGUauuguGGCaGCCAUUGGUUu-- -3'
miRNA:   3'- gaUUGGGCG-----CCGcCGGUAACCAGcgg -5'
13155 5' -58.3 NC_003401.1 + 105780 0.66 0.795303
Target:  5'- -gGACCCGCG--GGCCAaaGGUgGUCa -3'
miRNA:   3'- gaUUGGGCGCcgCCGGUaaCCAgCGG- -5'
13155 5' -58.3 NC_003401.1 + 37062 0.66 0.795303
Target:  5'- ----aCCGCaGCGGCC-UUGGcuUCGCg -3'
miRNA:   3'- gauugGGCGcCGCCGGuAACC--AGCGg -5'
13155 5' -58.3 NC_003401.1 + 13876 0.67 0.767926
Target:  5'- -gGGCCUG-GGCGauGgCGUUGGUgCGCCg -3'
miRNA:   3'- gaUUGGGCgCCGC--CgGUAACCA-GCGG- -5'
13155 5' -58.3 NC_003401.1 + 18446 0.67 0.767926
Target:  5'- -gGGCgCgGCGGCGGCCAcaagGGU-GUCu -3'
miRNA:   3'- gaUUG-GgCGCCGCCGGUaa--CCAgCGG- -5'
13155 5' -58.3 NC_003401.1 + 41026 0.67 0.758553
Target:  5'- uUGACagaGCGGCGGCCG-UGGcucacgUGCUg -3'
miRNA:   3'- gAUUGgg-CGCCGCCGGUaACCa-----GCGG- -5'
13155 5' -58.3 NC_003401.1 + 63785 0.67 0.758553
Target:  5'- cCUGACCagGCGGgcgaGGCCcgUGGcgaaaaGCCg -3'
miRNA:   3'- -GAUUGGg-CGCCg---CCGGuaACCag----CGG- -5'
13155 5' -58.3 NC_003401.1 + 51008 0.67 0.758553
Target:  5'- aUAACuuGCGcGUGGUCAcggacggUGGUUGCg -3'
miRNA:   3'- gAUUGggCGC-CGCCGGUa------ACCAGCGg -5'
13155 5' -58.3 NC_003401.1 + 132552 0.67 0.757609
Target:  5'- -cAAgCCGCGGCGcgcggcucccgauGCCGggcGGcCGCCg -3'
miRNA:   3'- gaUUgGGCGCCGC-------------CGGUaa-CCaGCGG- -5'
13155 5' -58.3 NC_003401.1 + 12500 0.67 0.749071
Target:  5'- -aGACCCGCguuucGGUGGUgGgcuggcgGGUCGCg -3'
miRNA:   3'- gaUUGGGCG-----CCGCCGgUaa-----CCAGCGg -5'
13155 5' -58.3 NC_003401.1 + 88983 0.67 0.746206
Target:  5'- -cGAUCCGCGuaaacCGGCCGUcuggccugagggcaUGGUUGCUc -3'
miRNA:   3'- gaUUGGGCGCc----GCCGGUA--------------ACCAGCGG- -5'
13155 5' -58.3 NC_003401.1 + 127671 0.67 0.743333
Target:  5'- --uACCUGCGGCGcuccCCAgguaaagcgagcgcUGGUUGCCa -3'
miRNA:   3'- gauUGGGCGCCGCc---GGUa-------------ACCAGCGG- -5'
13155 5' -58.3 NC_003401.1 + 20275 0.67 0.739488
Target:  5'- --cGCCCGgGgacgcggacgccGCGGCCAUUGGcucCGCg -3'
miRNA:   3'- gauUGGGCgC------------CGCCGGUAACCa--GCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.