miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13156 5' -50.4 NC_003401.1 + 7527 0.67 0.986847
Target:  5'- uGGCGGCGGUgccgaCAUaauGGAcCAUGUuaaaCGCCu -3'
miRNA:   3'- -CCGCCGCCA-----GUAg--UCUuGUAUA----GUGG- -5'
13156 5' -50.4 NC_003401.1 + 8512 0.7 0.934668
Target:  5'- cGCGGCGGUCuugguGUCggGGAACAgcgCGCg -3'
miRNA:   3'- cCGCCGCCAG-----UAG--UCUUGUauaGUGg -5'
13156 5' -50.4 NC_003401.1 + 9119 0.73 0.846518
Target:  5'- aGGCGGUcgauaaugggGGUCAUCAuGACGUGUCuCUu -3'
miRNA:   3'- -CCGCCG----------CCAGUAGUcUUGUAUAGuGG- -5'
13156 5' -50.4 NC_003401.1 + 11181 0.68 0.981157
Target:  5'- aGGgGGcCGGUUAUCAGGcCGUAaaACUg -3'
miRNA:   3'- -CCgCC-GCCAGUAGUCUuGUAUagUGG- -5'
13156 5' -50.4 NC_003401.1 + 11750 0.67 0.989834
Target:  5'- cGCGGUGGUgGUCgcgcccuuggGGGugGUGacguuuUCGCCa -3'
miRNA:   3'- cCGCCGCCAgUAG----------UCUugUAU------AGUGG- -5'
13156 5' -50.4 NC_003401.1 + 12021 0.68 0.976451
Target:  5'- -aCGGCGGUC-UCGGuccacccucGAUAgacgGUCACCg -3'
miRNA:   3'- ccGCCGCCAGuAGUC---------UUGUa---UAGUGG- -5'
13156 5' -50.4 NC_003401.1 + 13660 0.67 0.985121
Target:  5'- gGGCcaGGCGGUCGcgguUCAGGucgauCGUGUUGuCCa -3'
miRNA:   3'- -CCG--CCGCCAGU----AGUCUu----GUAUAGU-GG- -5'
13156 5' -50.4 NC_003401.1 + 13682 0.75 0.734246
Target:  5'- uGUGGCGGUCGUCcuGAuCGUGUUugCg -3'
miRNA:   3'- cCGCCGCCAGUAGu-CUuGUAUAGugG- -5'
13156 5' -50.4 NC_003401.1 + 14914 0.67 0.989698
Target:  5'- aGGCGGUcgcugagGGUCG--AGAGCAUGgaACCg -3'
miRNA:   3'- -CCGCCG-------CCAGUagUCUUGUAUagUGG- -5'
13156 5' -50.4 NC_003401.1 + 17377 0.69 0.957241
Target:  5'- uGGUGGCGGUCuccGUUGGucGCuccUCGCCg -3'
miRNA:   3'- -CCGCCGCCAG---UAGUCu-UGuauAGUGG- -5'
13156 5' -50.4 NC_003401.1 + 18487 0.75 0.754387
Target:  5'- cGCGGCGcGUCGUCggcGGAGCuuaAUcgCACCa -3'
miRNA:   3'- cCGCCGC-CAGUAG---UCUUG---UAuaGUGG- -5'
13156 5' -50.4 NC_003401.1 + 20083 0.67 0.986847
Target:  5'- gGGCGGacagcaccaCGGUCAccgCGGAGCcaAUgGCCg -3'
miRNA:   3'- -CCGCC---------GCCAGUa--GUCUUGuaUAgUGG- -5'
13156 5' -50.4 NC_003401.1 + 26981 0.69 0.957241
Target:  5'- gGGCGGCGGagGgccCuGAACAgc-CGCCa -3'
miRNA:   3'- -CCGCCGCCagUa--GuCUUGUauaGUGG- -5'
13156 5' -50.4 NC_003401.1 + 28198 0.66 0.995017
Target:  5'- aGGCGGCGGUaucCAcGAugGaUA-CGCCg -3'
miRNA:   3'- -CCGCCGCCAguaGU-CUugU-AUaGUGG- -5'
13156 5' -50.4 NC_003401.1 + 36314 0.7 0.948964
Target:  5'- aGGCGGCGGgcccgUAUCAGAGagaAUAcuUCGaauCCa -3'
miRNA:   3'- -CCGCCGCCa----GUAGUCUUg--UAU--AGU---GG- -5'
13156 5' -50.4 NC_003401.1 + 40328 0.74 0.783699
Target:  5'- cGGUGGCGGaCGggCAGGACucccUCGCCa -3'
miRNA:   3'- -CCGCCGCCaGUa-GUCUUGuau-AGUGG- -5'
13156 5' -50.4 NC_003401.1 + 42541 0.66 0.995734
Target:  5'- cGGaCGGCGGUCAUC---GCAaa--GCCc -3'
miRNA:   3'- -CC-GCCGCCAGUAGucuUGUauagUGG- -5'
13156 5' -50.4 NC_003401.1 + 43203 0.67 0.988415
Target:  5'- cGUGGUGGUCAaCGGAACggauGUGUUucuagaacaACCg -3'
miRNA:   3'- cCGCCGCCAGUaGUCUUG----UAUAG---------UGG- -5'
13156 5' -50.4 NC_003401.1 + 43612 0.72 0.899152
Target:  5'- cGCGGUGGaUUuuauUCAG-GCAUAUCACUa -3'
miRNA:   3'- cCGCCGCC-AGu---AGUCuUGUAUAGUGG- -5'
13156 5' -50.4 NC_003401.1 + 69225 0.73 0.846518
Target:  5'- aGCGGU-GUCA-CAGAGCAU-UCACCa -3'
miRNA:   3'- cCGCCGcCAGUaGUCUUGUAuAGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.