miRNA display CGI


Results 1 - 20 of 38 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13156 5' -50.4 NC_003401.1 + 13682 0.75 0.734246
Target:  5'- uGUGGCGGUCGUCcuGAuCGUGUUugCg -3'
miRNA:   3'- cCGCCGCCAGUAGu-CUuGUAUAGugG- -5'
13156 5' -50.4 NC_003401.1 + 118258 0.66 0.995734
Target:  5'- aGCGGU-GUCAgCGGAACAUAUUcuccCCg -3'
miRNA:   3'- cCGCCGcCAGUaGUCUUGUAUAGu---GG- -5'
13156 5' -50.4 NC_003401.1 + 88416 0.66 0.995528
Target:  5'- -cUGGCGGUuaccucguugcguaCGUCcaGGAGCAUGcCGCCg -3'
miRNA:   3'- ccGCCGCCA--------------GUAG--UCUUGUAUaGUGG- -5'
13156 5' -50.4 NC_003401.1 + 127483 0.66 0.995017
Target:  5'- cGUGGCGGUCAguuggcUCAGAAUgguugGUGgaaGCUg -3'
miRNA:   3'- cCGCCGCCAGU------AGUCUUG-----UAUag-UGG- -5'
13156 5' -50.4 NC_003401.1 + 28198 0.66 0.995017
Target:  5'- aGGCGGCGGUaucCAcGAugGaUA-CGCCg -3'
miRNA:   3'- -CCGCCGCCAguaGU-CUugU-AUaGUGG- -5'
13156 5' -50.4 NC_003401.1 + 125693 0.66 0.993289
Target:  5'- uGGUgaaGGCGGcCAUCAGcgcccugggaAGCGgggCACCg -3'
miRNA:   3'- -CCG---CCGCCaGUAGUC----------UUGUauaGUGG- -5'
13156 5' -50.4 NC_003401.1 + 43203 0.67 0.988415
Target:  5'- cGUGGUGGUCAaCGGAACggauGUGUUucuagaacaACCg -3'
miRNA:   3'- cCGCCGCCAGUaGUCUUG----UAUAG---------UGG- -5'
13156 5' -50.4 NC_003401.1 + 20083 0.67 0.986847
Target:  5'- gGGCGGacagcaccaCGGUCAccgCGGAGCcaAUgGCCg -3'
miRNA:   3'- -CCGCC---------GCCAGUa--GUCUUGuaUAgUGG- -5'
13156 5' -50.4 NC_003401.1 + 105495 0.68 0.973798
Target:  5'- gGGUGGCGGcCGUCAccuGGGCGc-UCACg -3'
miRNA:   3'- -CCGCCGCCaGUAGU---CUUGUauAGUGg -5'
13156 5' -50.4 NC_003401.1 + 43612 0.72 0.899152
Target:  5'- cGCGGUGGaUUuuauUCAG-GCAUAUCACUa -3'
miRNA:   3'- cCGCCGCC-AGu---AGUCuUGUAUAGUGG- -5'
13156 5' -50.4 NC_003401.1 + 93689 0.72 0.870467
Target:  5'- uGGCGGCGGUUAcuauugaCAGGccaaACAUAccuugguccgcUCACCg -3'
miRNA:   3'- -CCGCCGCCAGUa------GUCU----UGUAU-----------AGUGG- -5'
13156 5' -50.4 NC_003401.1 + 69225 0.73 0.846518
Target:  5'- aGCGGU-GUCA-CAGAGCAU-UCACCa -3'
miRNA:   3'- cCGCCGcCAGUaGUCUUGUAuAGUGG- -5'
13156 5' -50.4 NC_003401.1 + 40328 0.74 0.783699
Target:  5'- cGGUGGCGGaCGggCAGGACucccUCGCCa -3'
miRNA:   3'- -CCGCCGCCaGUa-GUCUUGuau-AGUGG- -5'
13156 5' -50.4 NC_003401.1 + 36314 0.7 0.948964
Target:  5'- aGGCGGCGGgcccgUAUCAGAGagaAUAcuUCGaauCCa -3'
miRNA:   3'- -CCGCCGCCa----GUAGUCUUg--UAU--AGU---GG- -5'
13156 5' -50.4 NC_003401.1 + 8512 0.7 0.934668
Target:  5'- cGCGGCGGUCuugguGUCggGGAACAgcgCGCg -3'
miRNA:   3'- cCGCCGCCAG-----UAG--UCUUGUauaGUGg -5'
13156 5' -50.4 NC_003401.1 + 128395 0.7 0.934152
Target:  5'- cGCcGCGGUgAUgcucccguuacaaCGGAACAUAUUACCg -3'
miRNA:   3'- cCGcCGCCAgUA-------------GUCUUGUAUAGUGG- -5'
13156 5' -50.4 NC_003401.1 + 70729 0.72 0.892345
Target:  5'- cGCGGaCGGUCuuUUAGAACAcg-CGCCc -3'
miRNA:   3'- cCGCC-GCCAGu-AGUCUUGUauaGUGG- -5'
13156 5' -50.4 NC_003401.1 + 9119 0.73 0.846518
Target:  5'- aGGCGGUcgauaaugggGGUCAUCAuGACGUGUCuCUu -3'
miRNA:   3'- -CCGCCG----------CCAGUAGUcUUGUAUAGuGG- -5'
13156 5' -50.4 NC_003401.1 + 18487 0.75 0.754387
Target:  5'- cGCGGCGcGUCGUCggcGGAGCuuaAUcgCACCa -3'
miRNA:   3'- cCGCCGC-CAGUAG---UCUUG---UAuaGUGG- -5'
13156 5' -50.4 NC_003401.1 + 42541 0.66 0.995734
Target:  5'- cGGaCGGCGGUCAUC---GCAaa--GCCc -3'
miRNA:   3'- -CC-GCCGCCAGUAGucuUGUauagUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.