miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13160 5' -54.3 NC_003401.1 + 8820 0.66 0.934613
Target:  5'- gUGgCGAuuGCCGCGGAGCCcaGCacguGGGg -3'
miRNA:   3'- gACaGUUu-CGGCGCCUUGG--CGgu--UCC- -5'
13160 5' -54.3 NC_003401.1 + 10836 0.77 0.420265
Target:  5'- -cGUCGcuuGCCGCGGuuGCCGCCAcGGu -3'
miRNA:   3'- gaCAGUuu-CGGCGCCu-UGGCGGUuCC- -5'
13160 5' -54.3 NC_003401.1 + 12446 0.67 0.912494
Target:  5'- uUGU--GAGCaCGCGGG--CGCCGAGGc -3'
miRNA:   3'- gACAguUUCG-GCGCCUugGCGGUUCC- -5'
13160 5' -54.3 NC_003401.1 + 16658 0.69 0.848811
Target:  5'- -gGUCAAGGCUGCGGcGCgGCUg--- -3'
miRNA:   3'- gaCAGUUUCGGCGCCuUGgCGGuucc -5'
13160 5' -54.3 NC_003401.1 + 20099 0.66 0.948625
Target:  5'- -gGUCA---CCGCGGAGCCaaugGCCGcGGc -3'
miRNA:   3'- gaCAGUuucGGCGCCUUGG----CGGUuCC- -5'
13160 5' -54.3 NC_003401.1 + 20393 0.69 0.83228
Target:  5'- cCUGUCAagaGAGgCGCGGuuGCCgGCCcacuGGGg -3'
miRNA:   3'- -GACAGU---UUCgGCGCCu-UGG-CGGu---UCC- -5'
13160 5' -54.3 NC_003401.1 + 21475 0.66 0.934613
Target:  5'- -cGgcgCAGGGCUuCgGGGACCGCCGcgAGGg -3'
miRNA:   3'- gaCa--GUUUCGGcG-CCUUGGCGGU--UCC- -5'
13160 5' -54.3 NC_003401.1 + 22232 0.68 0.886482
Target:  5'- gCUGcCAAGGCCcucuuCGGAAUCGUCAaucAGGc -3'
miRNA:   3'- -GACaGUUUCGGc----GCCUUGGCGGU---UCC- -5'
13160 5' -54.3 NC_003401.1 + 22824 0.68 0.886482
Target:  5'- -cGUCGAggcgggcccgGGCCGCGGGuauuaauggacGCCGUCAAc- -3'
miRNA:   3'- gaCAGUU----------UCGGCGCCU-----------UGGCGGUUcc -5'
13160 5' -54.3 NC_003401.1 + 48592 0.66 0.948193
Target:  5'- -cGgCAAcGGCCGCGGAucuugccGCUGCCAcuuGGu -3'
miRNA:   3'- gaCaGUU-UCGGCGCCU-------UGGCGGUu--CC- -5'
13160 5' -54.3 NC_003401.1 + 58742 0.66 0.939527
Target:  5'- -gGUUuAAcUCGUGGuauGCCGCCAAGGu -3'
miRNA:   3'- gaCAGuUUcGGCGCCu--UGGCGGUUCC- -5'
13160 5' -54.3 NC_003401.1 + 60333 0.69 0.83228
Target:  5'- aUGUCAcAGGaCCGCGGAGCaCGCaAAGu -3'
miRNA:   3'- gACAGU-UUC-GGCGCCUUG-GCGgUUCc -5'
13160 5' -54.3 NC_003401.1 + 60504 0.67 0.924046
Target:  5'- gUGUCGccGUCGgGGGugCGCCugacaauAGGc -3'
miRNA:   3'- gACAGUuuCGGCgCCUugGCGGu------UCC- -5'
13160 5' -54.3 NC_003401.1 + 66876 0.67 0.924046
Target:  5'- gCUGUCAAAGgUGCGcGAgcGCC-CCAGGc -3'
miRNA:   3'- -GACAGUUUCgGCGC-CU--UGGcGGUUCc -5'
13160 5' -54.3 NC_003401.1 + 68512 0.72 0.658313
Target:  5'- -gGUUAAAacCCGCGGGGCCGCCAc-- -3'
miRNA:   3'- gaCAGUUUc-GGCGCCUUGGCGGUucc -5'
13160 5' -54.3 NC_003401.1 + 71655 0.67 0.923491
Target:  5'- -gGUCAaaauaaaGAGCCGCcuGGGACagcaCCGAGGg -3'
miRNA:   3'- gaCAGU-------UUCGGCG--CCUUGgc--GGUUCC- -5'
13160 5' -54.3 NC_003401.1 + 71722 0.66 0.948625
Target:  5'- uUGUCu--GUC-CGGAACCGUCcAGGc -3'
miRNA:   3'- gACAGuuuCGGcGCCUUGGCGGuUCC- -5'
13160 5' -54.3 NC_003401.1 + 73376 0.68 0.879391
Target:  5'- -aGUCAAAGgCGUacGGAACCGUauGGGc -3'
miRNA:   3'- gaCAGUUUCgGCG--CCUUGGCGguUCC- -5'
13160 5' -54.3 NC_003401.1 + 80547 0.69 0.82373
Target:  5'- --cUCAGAGCgGUGGuccguCCGCCAuGGg -3'
miRNA:   3'- gacAGUUUCGgCGCCuu---GGCGGUuCC- -5'
13160 5' -54.3 NC_003401.1 + 83180 0.71 0.742715
Target:  5'- aCUGUCGAuccaggggcaucuuGCaCGCGGcuggcagggaauuAACCGCUAAGGa -3'
miRNA:   3'- -GACAGUUu-------------CG-GCGCC-------------UUGGCGGUUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.