miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13160 5' -54.3 NC_003401.1 + 68512 0.72 0.658313
Target:  5'- -gGUUAAAacCCGCGGGGCCGCCAc-- -3'
miRNA:   3'- gaCAGUUUc-GGCGCCUUGGCGGUucc -5'
13160 5' -54.3 NC_003401.1 + 20099 0.66 0.948625
Target:  5'- -gGUCA---CCGCGGAGCCaaugGCCGcGGc -3'
miRNA:   3'- gaCAGUuucGGCGCCUUGG----CGGUuCC- -5'
13160 5' -54.3 NC_003401.1 + 58742 0.66 0.939527
Target:  5'- -gGUUuAAcUCGUGGuauGCCGCCAAGGu -3'
miRNA:   3'- gaCAGuUUcGGCGCCu--UGGCGGUUCC- -5'
13160 5' -54.3 NC_003401.1 + 60504 0.67 0.924046
Target:  5'- gUGUCGccGUCGgGGGugCGCCugacaauAGGc -3'
miRNA:   3'- gACAGUuuCGGCgCCUugGCGGu------UCC- -5'
13160 5' -54.3 NC_003401.1 + 71655 0.67 0.923491
Target:  5'- -gGUCAaaauaaaGAGCCGCcuGGGACagcaCCGAGGg -3'
miRNA:   3'- gaCAGU-------UUCGGCG--CCUUGgc--GGUUCC- -5'
13160 5' -54.3 NC_003401.1 + 120884 0.67 0.906351
Target:  5'- aUGcaaAAAGCCGggaugaCGGGACUGCCAGGu -3'
miRNA:   3'- gACag-UUUCGGC------GCCUUGGCGGUUCc -5'
13160 5' -54.3 NC_003401.1 + 124993 0.67 0.899315
Target:  5'- aCUGUCAuguccgcAAGCUcggGCGGcAcguacgcccACUGCCAGGGg -3'
miRNA:   3'- -GACAGU-------UUCGG---CGCC-U---------UGGCGGUUCC- -5'
13160 5' -54.3 NC_003401.1 + 132689 0.68 0.886482
Target:  5'- -cGgCGGGGCCcggcGCGGGGCgCGaCCGAGGg -3'
miRNA:   3'- gaCaGUUUCGG----CGCCUUG-GC-GGUUCC- -5'
13160 5' -54.3 NC_003401.1 + 98687 0.68 0.886482
Target:  5'- -cGUCuccAGCC-CGGGauucGCCGCCGAGu -3'
miRNA:   3'- gaCAGuu-UCGGcGCCU----UGGCGGUUCc -5'
13160 5' -54.3 NC_003401.1 + 109506 0.71 0.729808
Target:  5'- ---cCGAGGCCGuCGGAGugacCCGUCAGGGc -3'
miRNA:   3'- gacaGUUUCGGC-GCCUU----GGCGGUUCC- -5'
13160 5' -54.3 NC_003401.1 + 20393 0.69 0.83228
Target:  5'- cCUGUCAagaGAGgCGCGGuuGCCgGCCcacuGGGg -3'
miRNA:   3'- -GACAGU---UUCgGCGCCu-UGG-CGGu---UCC- -5'
13160 5' -54.3 NC_003401.1 + 16658 0.69 0.848811
Target:  5'- -gGUCAAGGCUGCGGcGCgGCUg--- -3'
miRNA:   3'- gaCAGUUUCGGCGCCuUGgCGGuucc -5'
13160 5' -54.3 NC_003401.1 + 117600 0.68 0.856777
Target:  5'- ---aCAGacGGCCGCGGcgaccaauGGCCGCCGcGGg -3'
miRNA:   3'- gacaGUU--UCGGCGCC--------UUGGCGGUuCC- -5'
13160 5' -54.3 NC_003401.1 + 132413 0.68 0.864532
Target:  5'- -cG-CGGGGCCGgGGGucCCGCgGGGGg -3'
miRNA:   3'- gaCaGUUUCGGCgCCUu-GGCGgUUCC- -5'
13160 5' -54.3 NC_003401.1 + 22232 0.68 0.886482
Target:  5'- gCUGcCAAGGCCcucuuCGGAAUCGUCAaucAGGc -3'
miRNA:   3'- -GACaGUUUCGGc----GCCUUGGCGGU---UCC- -5'
13160 5' -54.3 NC_003401.1 + 71722 0.66 0.948625
Target:  5'- uUGUCu--GUC-CGGAACCGUCcAGGc -3'
miRNA:   3'- gACAGuuuCGGcGCCUUGGCGGuUCC- -5'
13160 5' -54.3 NC_003401.1 + 10836 0.77 0.420265
Target:  5'- -cGUCGcuuGCCGCGGuuGCCGCCAcGGu -3'
miRNA:   3'- gaCAGUuu-CGGCGCCu-UGGCGGUuCC- -5'
13160 5' -54.3 NC_003401.1 + 132663 0.74 0.534735
Target:  5'- -cGUCGGGG-CGCGGcGCCGCCGGGc -3'
miRNA:   3'- gaCAGUUUCgGCGCCuUGGCGGUUCc -5'
13160 5' -54.3 NC_003401.1 + 104076 0.71 0.739751
Target:  5'- uUGgCGGAGCCGUucGGCCGCCGAGa -3'
miRNA:   3'- gACaGUUUCGGCGccUUGGCGGUUCc -5'
13160 5' -54.3 NC_003401.1 + 83180 0.71 0.742715
Target:  5'- aCUGUCGAuccaggggcaucuuGCaCGCGGcuggcagggaauuAACCGCUAAGGa -3'
miRNA:   3'- -GACAGUUu-------------CG-GCGCC-------------UUGGCGGUUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.