miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13179 3' -50 NC_003401.1 + 6274 0.66 0.99604
Target:  5'- aCAccACGACGCUcGCCGuuaagguGACGugcuuucACAGAg -3'
miRNA:   3'- aGU--UGCUGCGA-CGGCuu-----UUGC-------UGUCU- -5'
13179 3' -50 NC_003401.1 + 6824 1.1 0.008647
Target:  5'- uUCAACGACGCUGCCGAAAACGACAGAc -3'
miRNA:   3'- -AGUUGCUGCGACGGCUUUUGCUGUCU- -5'
13179 3' -50 NC_003401.1 + 7018 0.68 0.980011
Target:  5'- gCGACGACGCUGUCcacaaucAUGugGGAc -3'
miRNA:   3'- aGUUGCUGCGACGGcuuu---UGCugUCU- -5'
13179 3' -50 NC_003401.1 + 7529 0.68 0.982192
Target:  5'- gUUGGCGGCGgUGCCGAcauAAugGACc-- -3'
miRNA:   3'- -AGUUGCUGCgACGGCU---UUugCUGucu -5'
13179 3' -50 NC_003401.1 + 8740 0.68 0.984189
Target:  5'- aCGACGGCGCgucaGCCGGucGCcgccACAGGg -3'
miRNA:   3'- aGUUGCUGCGa---CGGCUuuUGc---UGUCU- -5'
13179 3' -50 NC_003401.1 + 9402 0.7 0.954954
Target:  5'- aUUAACG-CGCUGCUGA--GCGAUcuAGAc -3'
miRNA:   3'- -AGUUGCuGCGACGGCUuuUGCUG--UCU- -5'
13179 3' -50 NC_003401.1 + 12899 0.67 0.992832
Target:  5'- -gGGCGugG-UGCCGAGAACagGugAGGg -3'
miRNA:   3'- agUUGCugCgACGGCUUUUG--CugUCU- -5'
13179 3' -50 NC_003401.1 + 14412 0.66 0.996692
Target:  5'- uUCAcgcguACGACGUcGuuGAAAcaacguacGCGGCGGAc -3'
miRNA:   3'- -AGU-----UGCUGCGaCggCUUU--------UGCUGUCU- -5'
13179 3' -50 NC_003401.1 + 17885 0.71 0.931459
Target:  5'- gUCugaGACGCcucGCCGGAGACGcGCAGGg -3'
miRNA:   3'- -AGuugCUGCGa--CGGCUUUUGC-UGUCU- -5'
13179 3' -50 NC_003401.1 + 19293 0.66 0.99571
Target:  5'- gUUGACGGCGCUGCgcuggucguuguccaUGAucAGGCGGCAa- -3'
miRNA:   3'- -AGUUGCUGCGACG---------------GCU--UUUGCUGUcu -5'
13179 3' -50 NC_003401.1 + 20283 0.72 0.88768
Target:  5'- -gGACGACGC-GcCCGggGACG-CGGAc -3'
miRNA:   3'- agUUGCUGCGaC-GGCuuUUGCuGUCU- -5'
13179 3' -50 NC_003401.1 + 20910 0.72 0.880412
Target:  5'- aUCAACGugGUUGuuGuAAACGugGGc -3'
miRNA:   3'- -AGUUGCugCGACggCuUUUGCugUCu -5'
13179 3' -50 NC_003401.1 + 21162 0.69 0.969276
Target:  5'- aUAACGAUGC-GCCGAu--CGugGGGc -3'
miRNA:   3'- aGUUGCUGCGaCGGCUuuuGCugUCU- -5'
13179 3' -50 NC_003401.1 + 23545 0.66 0.996103
Target:  5'- gUggUGGCGCUGgCGAAGAUaguggccGCAGAg -3'
miRNA:   3'- aGuuGCUGCGACgGCUUUUGc------UGUCU- -5'
13179 3' -50 NC_003401.1 + 23705 0.66 0.994668
Target:  5'- cCGGCaGCGCcgGuuGGAcGCGGCGGAc -3'
miRNA:   3'- aGUUGcUGCGa-CggCUUuUGCUGUCU- -5'
13179 3' -50 NC_003401.1 + 23854 0.68 0.983012
Target:  5'- cCAAcCGGCGCUGCCGGuccgccauuuugccaAAucgcgGCGugGGGg -3'
miRNA:   3'- aGUU-GCUGCGACGGCU---------------UU-----UGCugUCU- -5'
13179 3' -50 NC_003401.1 + 27702 0.67 0.992832
Target:  5'- gCGugGugGCUcGCCGGcuGCGGgGGc -3'
miRNA:   3'- aGUugCugCGA-CGGCUuuUGCUgUCu -5'
13179 3' -50 NC_003401.1 + 30893 0.71 0.931459
Target:  5'- aUCGA-GGCgGCUGuuGAGAuuACGGCAGAc -3'
miRNA:   3'- -AGUUgCUG-CGACggCUUU--UGCUGUCU- -5'
13179 3' -50 NC_003401.1 + 54349 0.68 0.984189
Target:  5'- cCGGCGAuCGaguuUGUCGGAGAgGACAGGc -3'
miRNA:   3'- aGUUGCU-GCg---ACGGCUUUUgCUGUCU- -5'
13179 3' -50 NC_003401.1 + 60598 0.66 0.995431
Target:  5'- -aAACGuACGCUuCCGGAGACGuuacgauaucGCGGAu -3'
miRNA:   3'- agUUGC-UGCGAcGGCUUUUGC----------UGUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.