miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13179 3' -50 NC_003401.1 + 119777 0.66 0.993804
Target:  5'- cCGACGGCcuccGCcaaucugGCCGGAGGCGGCGc- -3'
miRNA:   3'- aGUUGCUG----CGa------CGGCUUUUGCUGUcu -5'
13179 3' -50 NC_003401.1 + 66380 0.68 0.980011
Target:  5'- gUCccCGGCGCUaagGCCGugaauGCGGCAGGc -3'
miRNA:   3'- -AGuuGCUGCGA---CGGCuuu--UGCUGUCU- -5'
13179 3' -50 NC_003401.1 + 100987 0.68 0.980011
Target:  5'- aCGACGAUGCgauauccGCCGAGgugaucuggaugGACGACGa- -3'
miRNA:   3'- aGUUGCUGCGa------CGGCUU------------UUGCUGUcu -5'
13179 3' -50 NC_003401.1 + 8740 0.68 0.984189
Target:  5'- aCGACGGCGCgucaGCCGGucGCcgccACAGGg -3'
miRNA:   3'- aGUUGCUGCGa---CGGCUuuUGc---UGUCU- -5'
13179 3' -50 NC_003401.1 + 54349 0.68 0.984189
Target:  5'- cCGGCGAuCGaguuUGUCGGAGAgGACAGGc -3'
miRNA:   3'- aGUUGCU-GCg---ACGGCUUUUgCUGUCU- -5'
13179 3' -50 NC_003401.1 + 99925 0.67 0.989169
Target:  5'- gCAACGACGCaccagGCCGAcuGCagguuCGGAc -3'
miRNA:   3'- aGUUGCUGCGa----CGGCUuuUGcu---GUCU- -5'
13179 3' -50 NC_003401.1 + 72128 0.67 0.991741
Target:  5'- gUAugGACGCUGCaCGGGAccucaaGCGuccguguCAGAc -3'
miRNA:   3'- aGUugCUGCGACG-GCUUU------UGCu------GUCU- -5'
13179 3' -50 NC_003401.1 + 12899 0.67 0.992832
Target:  5'- -gGGCGugG-UGCCGAGAACagGugAGGg -3'
miRNA:   3'- agUUGCugCgACGGCUUUUG--CugUCU- -5'
13179 3' -50 NC_003401.1 + 27702 0.67 0.992832
Target:  5'- gCGugGugGCUcGCCGGcuGCGGgGGc -3'
miRNA:   3'- aGUugCugCGA-CGGCUuuUGCUgUCu -5'
13179 3' -50 NC_003401.1 + 74555 0.68 0.977638
Target:  5'- cCAACagauACGuCUGCCGAAGgGCGGCGGu -3'
miRNA:   3'- aGUUGc---UGC-GACGGCUUU-UGCUGUCu -5'
13179 3' -50 NC_003401.1 + 118385 0.69 0.975063
Target:  5'- gCGGCGACGCUGaCGc---CGGCGGGu -3'
miRNA:   3'- aGUUGCUGCGACgGCuuuuGCUGUCU- -5'
13179 3' -50 NC_003401.1 + 21162 0.69 0.969276
Target:  5'- aUAACGAUGC-GCCGAu--CGugGGGc -3'
miRNA:   3'- aGUUGCUGCGaCGGCUuuuGCugUCU- -5'
13179 3' -50 NC_003401.1 + 121593 0.76 0.705299
Target:  5'- aCGACGAagGCUGCUGAuuGGGCGAUGGAu -3'
miRNA:   3'- aGUUGCUg-CGACGGCU--UUUGCUGUCU- -5'
13179 3' -50 NC_003401.1 + 70499 0.74 0.814125
Target:  5'- gCAGCuACGCUGCCG---GCGACGGu -3'
miRNA:   3'- aGUUGcUGCGACGGCuuuUGCUGUCu -5'
13179 3' -50 NC_003401.1 + 118606 0.74 0.823133
Target:  5'- aUCGACGGgGUUGCCGGucgguGAACGGgAGGc -3'
miRNA:   3'- -AGUUGCUgCGACGGCU-----UUUGCUgUCU- -5'
13179 3' -50 NC_003401.1 + 20910 0.72 0.880412
Target:  5'- aUCAACGugGUUGuuGuAAACGugGGc -3'
miRNA:   3'- -AGUUGCugCGACggCuUUUGCugUCu -5'
13179 3' -50 NC_003401.1 + 123728 0.71 0.931459
Target:  5'- -gGGCGAUGUUGCCGu-AGCGGCGu- -3'
miRNA:   3'- agUUGCUGCGACGGCuuUUGCUGUcu -5'
13179 3' -50 NC_003401.1 + 30893 0.71 0.931459
Target:  5'- aUCGA-GGCgGCUGuuGAGAuuACGGCAGAc -3'
miRNA:   3'- -AGUUgCUG-CGACggCUUU--UGCUGUCU- -5'
13179 3' -50 NC_003401.1 + 121688 0.71 0.936674
Target:  5'- --uGCGAUGCgggggaUGCCGggGACGACccuGAc -3'
miRNA:   3'- aguUGCUGCG------ACGGCuuUUGCUGu--CU- -5'
13179 3' -50 NC_003401.1 + 9402 0.7 0.954954
Target:  5'- aUUAACG-CGCUGCUGA--GCGAUcuAGAc -3'
miRNA:   3'- -AGUUGCuGCGACGGCUuuUGCUG--UCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.