miRNA display CGI


Results 21 - 40 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13190 3' -62.3 NC_003401.1 + 20714 0.67 0.540813
Target:  5'- uGGACCuggcguugacCGGCCGCC--GCCCGCGAUUg -3'
miRNA:   3'- -CUUGGc---------GCUGGCGGacCGGGCGCUGG- -5'
13190 3' -62.3 NC_003401.1 + 21783 0.71 0.351141
Target:  5'- -uGCCGCGGCCGUccgCUGcGCgugCCGCGGCg -3'
miRNA:   3'- cuUGGCGCUGGCG---GAC-CG---GGCGCUGg -5'
13190 3' -62.3 NC_003401.1 + 23428 0.68 0.48474
Target:  5'- uAGCCGU-ACCGaCCccGGCCCGCGAa- -3'
miRNA:   3'- cUUGGCGcUGGC-GGa-CCGGGCGCUgg -5'
13190 3' -62.3 NC_003401.1 + 23640 0.66 0.608689
Target:  5'- -cGCCGCGAgCgGCCggcaggUGGCgCCGCGcuuucccccacGCCg -3'
miRNA:   3'- cuUGGCGCU-GgCGG------ACCG-GGCGC-----------UGG- -5'
13190 3' -62.3 NC_003401.1 + 23785 0.66 0.597917
Target:  5'- aGGGCCGCG-CCGgUUGGCggauaauaugaaaCCggcGCGGCCa -3'
miRNA:   3'- -CUUGGCGCuGGCgGACCG-------------GG---CGCUGG- -5'
13190 3' -62.3 NC_003401.1 + 28851 0.68 0.520905
Target:  5'- cGAGCCGUGA-CGCCagGGCCaagaaauCGUGGCUc -3'
miRNA:   3'- -CUUGGCGCUgGCGGa-CCGG-------GCGCUGG- -5'
13190 3' -62.3 NC_003401.1 + 37059 0.67 0.579381
Target:  5'- gGAACCGCaGCgGCCuUGGCuUCGCGGu- -3'
miRNA:   3'- -CUUGGCGcUGgCGG-ACCG-GGCGCUgg -5'
13190 3' -62.3 NC_003401.1 + 41527 0.67 0.550383
Target:  5'- cGGGCCuGCGccccACCaCCucgUGGCCCGCGAUUu -3'
miRNA:   3'- -CUUGG-CGC----UGGcGG---ACCGGGCGCUGG- -5'
13190 3' -62.3 NC_003401.1 + 42174 0.67 0.540813
Target:  5'- ---aCGUGACgCGCCUgccGGCCCaGCGcguGCCg -3'
miRNA:   3'- cuugGCGCUG-GCGGA---CCGGG-CGC---UGG- -5'
13190 3' -62.3 NC_003401.1 + 43146 0.69 0.423073
Target:  5'- gGAAUaCGCGGcCCGCCUcacgggaacGCCgGCGACCa -3'
miRNA:   3'- -CUUG-GCGCU-GGCGGAc--------CGGgCGCUGG- -5'
13190 3' -62.3 NC_003401.1 + 43225 0.68 0.503145
Target:  5'- aAACUgGCGACaCGgacuguacaucCCUGGCaCUGCGACCu -3'
miRNA:   3'- cUUGG-CGCUG-GC-----------GGACCG-GGCGCUGG- -5'
13190 3' -62.3 NC_003401.1 + 47841 0.68 0.520905
Target:  5'- cGGGCCGCGGggacgguCCGUCcGGgCCGUGGuCCg -3'
miRNA:   3'- -CUUGGCGCU-------GGCGGaCCgGGCGCU-GG- -5'
13190 3' -62.3 NC_003401.1 + 48905 0.7 0.406332
Target:  5'- -uACCcUGACCGCCUGGCUgGUGcucCCg -3'
miRNA:   3'- cuUGGcGCUGGCGGACCGGgCGCu--GG- -5'
13190 3' -62.3 NC_003401.1 + 49882 0.68 0.503145
Target:  5'- -cGCCGCG--CGCCUGGCCC-CGcACg -3'
miRNA:   3'- cuUGGCGCugGCGGACCGGGcGC-UGg -5'
13190 3' -62.3 NC_003401.1 + 50029 0.7 0.390014
Target:  5'- cGAACU-CGGCCGCCguccggGGCUCGCGuACa -3'
miRNA:   3'- -CUUGGcGCUGGCGGa-----CCGGGCGC-UGg -5'
13190 3' -62.3 NC_003401.1 + 51579 0.67 0.569672
Target:  5'- uGAACCGUccCCGCCguucgaGGCCuCGCGguugcgcgcaGCCa -3'
miRNA:   3'- -CUUGGCGcuGGCGGa-----CCGG-GCGC----------UGG- -5'
13190 3' -62.3 NC_003401.1 + 53024 0.72 0.301486
Target:  5'- -uGCUGuCGugCGCCgggGGCCCGCaGGCg -3'
miRNA:   3'- cuUGGC-GCugGCGGa--CCGGGCG-CUGg -5'
13190 3' -62.3 NC_003401.1 + 63939 0.67 0.560005
Target:  5'- cGGGCCuCGcCCGCCUGGUCagGUGAUa -3'
miRNA:   3'- -CUUGGcGCuGGCGGACCGGg-CGCUGg -5'
13190 3' -62.3 NC_003401.1 + 64109 0.71 0.343704
Target:  5'- cGAGCgCGCccgcgccacuGACCGCguuuggUGGUCCGCGGCCc -3'
miRNA:   3'- -CUUG-GCG----------CUGGCGg-----ACCGGGCGCUGG- -5'
13190 3' -62.3 NC_003401.1 + 66553 0.66 0.598895
Target:  5'- uGAGCCGUGcCUGCCgcauucacGGCCUuaGCG-CCg -3'
miRNA:   3'- -CUUGGCGCuGGCGGa-------CCGGG--CGCuGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.