miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13190 3' -62.3 NC_003401.1 + 59 0.67 0.540813
Target:  5'- -cACCGgguaCGGCUGCCUGccuGCUCGCuGGCCu -3'
miRNA:   3'- cuUGGC----GCUGGCGGAC---CGGGCG-CUGG- -5'
13190 3' -62.3 NC_003401.1 + 8401 0.66 0.589123
Target:  5'- cGACUGC-ACCGCCUcGGauCCCGCGGu- -3'
miRNA:   3'- cUUGGCGcUGGCGGA-CC--GGGCGCUgg -5'
13190 3' -62.3 NC_003401.1 + 9157 0.67 0.569672
Target:  5'- cGAACgUGCuGAUUGUCUGuCCCGCGGCUc -3'
miRNA:   3'- -CUUG-GCG-CUGGCGGACcGGGCGCUGG- -5'
13190 3' -62.3 NC_003401.1 + 9592 0.69 0.423073
Target:  5'- uGAACCGCGACCuucuGCCgcuGCUaCGCGAgCa -3'
miRNA:   3'- -CUUGGCGCUGG----CGGac-CGG-GCGCUgG- -5'
13190 3' -62.3 NC_003401.1 + 10829 0.74 0.21317
Target:  5'- -uGCCGCGguuGCCGCCacgguggUGGUCCGUGGCUc -3'
miRNA:   3'- cuUGGCGC---UGGCGG-------ACCGGGCGCUGG- -5'
13190 3' -62.3 NC_003401.1 + 11611 0.76 0.172241
Target:  5'- -cACCGCGAagccaaCGCCgGGCCCGuCGACg -3'
miRNA:   3'- cuUGGCGCUg-----GCGGaCCGGGC-GCUGg -5'
13190 3' -62.3 NC_003401.1 + 12443 0.74 0.23689
Target:  5'- uGAGCaCGCGGgCGCCgaGGCcguuuucgguuuucuCCGCGACCg -3'
miRNA:   3'- -CUUG-GCGCUgGCGGa-CCG---------------GGCGCUGG- -5'
13190 3' -62.3 NC_003401.1 + 13507 1.1 0.00064
Target:  5'- uGAACCGCGACCGCCUGGCCCGCGACCu -3'
miRNA:   3'- -CUUGGCGCUGGCGGACCGGGCGCUGG- -5'
13190 3' -62.3 NC_003401.1 + 13711 0.71 0.322078
Target:  5'- cGACCGUGcggccgacAUCGCCcaGGUCCGCGACUa -3'
miRNA:   3'- cUUGGCGC--------UGGCGGa-CCGGGCGCUGG- -5'
13190 3' -62.3 NC_003401.1 + 14012 0.7 0.382017
Target:  5'- -uGCCGC--CCGCCaGaGCCgCGCGGCCa -3'
miRNA:   3'- cuUGGCGcuGGCGGaC-CGG-GCGCUGG- -5'
13190 3' -62.3 NC_003401.1 + 14191 0.69 0.43074
Target:  5'- cGGCCGgGugCGCgaaucgaUUGGCCgCGCGGCUc -3'
miRNA:   3'- cUUGGCgCugGCG-------GACCGG-GCGCUGG- -5'
13190 3' -62.3 NC_003401.1 + 14358 0.69 0.41465
Target:  5'- cGGCgCGCGACCGCaa-GCCCGUcGCCc -3'
miRNA:   3'- cUUG-GCGCUGGCGgacCGGGCGcUGG- -5'
13190 3' -62.3 NC_003401.1 + 14763 0.67 0.569672
Target:  5'- cGACCcucaGCGACCGCCUcG-UCGCGugCg -3'
miRNA:   3'- cUUGG----CGCUGGCGGAcCgGGCGCugG- -5'
13190 3' -62.3 NC_003401.1 + 15722 0.66 0.6185
Target:  5'- --uCCGCGuguucucCUGCCUGcuggaGgCCGCGGCCa -3'
miRNA:   3'- cuuGGCGCu------GGCGGAC-----CgGGCGCUGG- -5'
13190 3' -62.3 NC_003401.1 + 15849 0.7 0.365584
Target:  5'- uGGCCGUccgucagGACgCGCCUGGCCUGaaucuuGGCCa -3'
miRNA:   3'- cUUGGCG-------CUG-GCGGACCGGGCg-----CUGG- -5'
13190 3' -62.3 NC_003401.1 + 15915 0.67 0.540813
Target:  5'- gGAACCGgGAggauaaaguuCUcCCUGG-CCGCGGCCu -3'
miRNA:   3'- -CUUGGCgCU----------GGcGGACCgGGCGCUGG- -5'
13190 3' -62.3 NC_003401.1 + 16485 0.68 0.502217
Target:  5'- aAACCGCGcGCCGUgacgGGCggucaccUCGCGACCg -3'
miRNA:   3'- cUUGGCGC-UGGCGga--CCG-------GGCGCUGG- -5'
13190 3' -62.3 NC_003401.1 + 16832 0.66 0.638143
Target:  5'- -uGCgGCGGCCGCUUGcacaacagccGCgCCGCaGCCu -3'
miRNA:   3'- cuUGgCGCUGGCGGAC----------CG-GGCGcUGG- -5'
13190 3' -62.3 NC_003401.1 + 19957 0.67 0.579381
Target:  5'- uGAGCCaccuguGUGuuCGCgaGGCgCGCGACCc -3'
miRNA:   3'- -CUUGG------CGCugGCGgaCCGgGCGCUGG- -5'
13190 3' -62.3 NC_003401.1 + 20259 0.7 0.406332
Target:  5'- -cGCCGCGGCCa-UUGGCuCCGCGgugACCg -3'
miRNA:   3'- cuUGGCGCUGGcgGACCG-GGCGC---UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.