miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13190 3' -62.3 NC_003401.1 + 13507 1.1 0.00064
Target:  5'- uGAACCGCGACCGCCUGGCCCGCGACCu -3'
miRNA:   3'- -CUUGGCGCUGGCGGACCGGGCGCUGG- -5'
13190 3' -62.3 NC_003401.1 + 132242 0.81 0.073419
Target:  5'- cGGGCCGCGGCCGCCaucuUGcGCCCGgGGCg -3'
miRNA:   3'- -CUUGGCGCUGGCGG----AC-CGGGCgCUGg -5'
13190 3' -62.3 NC_003401.1 + 132340 0.78 0.118955
Target:  5'- --uCCGCc-CCGCCggcccgGGCCCGCGGCCg -3'
miRNA:   3'- cuuGGCGcuGGCGGa-----CCGGGCGCUGG- -5'
13190 3' -62.3 NC_003401.1 + 117765 0.78 0.128212
Target:  5'- --cCCGCGGCgGCCaUGGUcgCCGCGGCCg -3'
miRNA:   3'- cuuGGCGCUGgCGG-ACCG--GGCGCUGG- -5'
13190 3' -62.3 NC_003401.1 + 132508 0.77 0.134749
Target:  5'- gGGGCgGCGGCCGCg-GGCCCG-GGCCg -3'
miRNA:   3'- -CUUGgCGCUGGCGgaCCGGGCgCUGG- -5'
13190 3' -62.3 NC_003401.1 + 11611 0.76 0.172241
Target:  5'- -cACCGCGAagccaaCGCCgGGCCCGuCGACg -3'
miRNA:   3'- cuUGGCGCUg-----GCGGaCCGGGC-GCUGg -5'
13190 3' -62.3 NC_003401.1 + 118726 0.75 0.18078
Target:  5'- cGGCCGCG-CCGCUUGGCggCGCGGCUu -3'
miRNA:   3'- cUUGGCGCuGGCGGACCGg-GCGCUGG- -5'
13190 3' -62.3 NC_003401.1 + 10829 0.74 0.21317
Target:  5'- -uGCCGCGguuGCCGCCacgguggUGGUCCGUGGCUc -3'
miRNA:   3'- cuUGGCGC---UGGCGG-------ACCGGGCGCUGG- -5'
13190 3' -62.3 NC_003401.1 + 122401 0.74 0.229282
Target:  5'- cGAACCGCGGaaagucuguuCCGCCgcgcaGCgCGCGGCCg -3'
miRNA:   3'- -CUUGGCGCU----------GGCGGac---CGgGCGCUGG- -5'
13190 3' -62.3 NC_003401.1 + 105995 0.74 0.229282
Target:  5'- -uGCCGCcGCgCGCCUGGCCaaggcgcuugggCGUGGCCg -3'
miRNA:   3'- cuUGGCGcUG-GCGGACCGG------------GCGCUGG- -5'
13190 3' -62.3 NC_003401.1 + 12443 0.74 0.23689
Target:  5'- uGAGCaCGCGGgCGCCgaGGCcguuuucgguuuucuCCGCGACCg -3'
miRNA:   3'- -CUUG-GCGCUgGCGGa-CCG---------------GGCGCUGG- -5'
13190 3' -62.3 NC_003401.1 + 120994 0.73 0.251578
Target:  5'- gGAACCGCcaaGGCCGUCaaaaaGGCCCGUcGCCg -3'
miRNA:   3'- -CUUGGCG---CUGGCGGa----CCGGGCGcUGG- -5'
13190 3' -62.3 NC_003401.1 + 69295 0.72 0.281923
Target:  5'- --uCUGCGGCC-CCUGGCCCGCa--- -3'
miRNA:   3'- cuuGGCGCUGGcGGACCGGGCGcugg -5'
13190 3' -62.3 NC_003401.1 + 132727 0.72 0.290924
Target:  5'- cGGgCGCGGCCGCCcGGCaucgggagccgcgcgCCGCGGCUu -3'
miRNA:   3'- cUUgGCGCUGGCGGaCCG---------------GGCGCUGG- -5'
13190 3' -62.3 NC_003401.1 + 132456 0.72 0.294851
Target:  5'- -uGCCGCu-CCGCCgGGCCCGgcCGACUc -3'
miRNA:   3'- cuUGGCGcuGGCGGaCCGGGC--GCUGG- -5'
13190 3' -62.3 NC_003401.1 + 53024 0.72 0.301486
Target:  5'- -uGCUGuCGugCGCCgggGGCCCGCaGGCg -3'
miRNA:   3'- cuUGGC-GCugGCGGa--CCGGGCG-CUGg -5'
13190 3' -62.3 NC_003401.1 + 118606 0.72 0.308235
Target:  5'- --cCCGCGAUCGCaccuuUGGCCgGcCGGCCu -3'
miRNA:   3'- cuuGGCGCUGGCGg----ACCGGgC-GCUGG- -5'
13190 3' -62.3 NC_003401.1 + 132281 0.72 0.315099
Target:  5'- --cCCGCGcGCCcCCcgGGCCCGCGcGCCg -3'
miRNA:   3'- cuuGGCGC-UGGcGGa-CCGGGCGC-UGG- -5'
13190 3' -62.3 NC_003401.1 + 132516 0.72 0.315099
Target:  5'- -cGCCGCGccccgaCGCCccccgGGCCCGgGGCCc -3'
miRNA:   3'- cuUGGCGCug----GCGGa----CCGGGCgCUGG- -5'
13190 3' -62.3 NC_003401.1 + 13711 0.71 0.322078
Target:  5'- cGACCGUGcggccgacAUCGCCcaGGUCCGCGACUa -3'
miRNA:   3'- cUUGGCGC--------UGGCGGa-CCGGGCGCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.