miRNA display CGI


Results 1 - 20 of 89 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13190 3' -62.3 NC_003401.1 + 9592 0.69 0.423073
Target:  5'- uGAACCGCGACCuucuGCCgcuGCUaCGCGAgCa -3'
miRNA:   3'- -CUUGGCGCUGG----CGGac-CGG-GCGCUgG- -5'
13190 3' -62.3 NC_003401.1 + 119746 0.71 0.351141
Target:  5'- cGGCgGCGGCCGCgaGG-UUGCGGCCg -3'
miRNA:   3'- cUUGgCGCUGGCGgaCCgGGCGCUGG- -5'
13190 3' -62.3 NC_003401.1 + 14012 0.7 0.382017
Target:  5'- -uGCCGC--CCGCCaGaGCCgCGCGGCCa -3'
miRNA:   3'- cuUGGCGcuGGCGGaC-CGG-GCGCUGG- -5'
13190 3' -62.3 NC_003401.1 + 117931 0.7 0.382017
Target:  5'- --cCCGCGGCCcaaaucugggGCCcauggUGGCgCGCGGCCc -3'
miRNA:   3'- cuuGGCGCUGG----------CGG-----ACCGgGCGCUGG- -5'
13190 3' -62.3 NC_003401.1 + 132650 0.7 0.385203
Target:  5'- --uCCGCG-CCGCCgggaggggggccggGGCCCGgGGCg -3'
miRNA:   3'- cuuGGCGCuGGCGGa-------------CCGGGCgCUGg -5'
13190 3' -62.3 NC_003401.1 + 50029 0.7 0.390014
Target:  5'- cGAACU-CGGCCGCCguccggGGCUCGCGuACa -3'
miRNA:   3'- -CUUGGcGCUGGCGGa-----CCGGGCGC-UGg -5'
13190 3' -62.3 NC_003401.1 + 48905 0.7 0.406332
Target:  5'- -uACCcUGACCGCCUGGCUgGUGcucCCg -3'
miRNA:   3'- cuUGGcGCUGGCGGACCGGgCGCu--GG- -5'
13190 3' -62.3 NC_003401.1 + 14358 0.69 0.41465
Target:  5'- cGGCgCGCGACCGCaa-GCCCGUcGCCc -3'
miRNA:   3'- cUUG-GCGCUGGCGgacCGGGCGcUGG- -5'
13190 3' -62.3 NC_003401.1 + 43146 0.69 0.423073
Target:  5'- gGAAUaCGCGGcCCGCCUcacgggaacGCCgGCGACCa -3'
miRNA:   3'- -CUUG-GCGCU-GGCGGAc--------CGGgCGCUGG- -5'
13190 3' -62.3 NC_003401.1 + 119211 0.71 0.346665
Target:  5'- aGAGCCaccgaaaaaagguggGUGACUGgUUGcGCCUGCGACCa -3'
miRNA:   3'- -CUUGG---------------CGCUGGCgGAC-CGGGCGCUGG- -5'
13190 3' -62.3 NC_003401.1 + 132516 0.72 0.315099
Target:  5'- -cGCCGCGccccgaCGCCccccgGGCCCGgGGCCc -3'
miRNA:   3'- cuUGGCGCug----GCGGa----CCGGGCgCUGG- -5'
13190 3' -62.3 NC_003401.1 + 132281 0.72 0.315099
Target:  5'- --cCCGCGcGCCcCCcgGGCCCGCGcGCCg -3'
miRNA:   3'- cuuGGCGC-UGGcGGa-CCGGGCGC-UGG- -5'
13190 3' -62.3 NC_003401.1 + 132242 0.81 0.073419
Target:  5'- cGGGCCGCGGCCGCCaucuUGcGCCCGgGGCg -3'
miRNA:   3'- -CUUGGCGCUGGCGG----AC-CGGGCgCUGg -5'
13190 3' -62.3 NC_003401.1 + 132340 0.78 0.118955
Target:  5'- --uCCGCc-CCGCCggcccgGGCCCGCGGCCg -3'
miRNA:   3'- cuuGGCGcuGGCGGa-----CCGGGCGCUGG- -5'
13190 3' -62.3 NC_003401.1 + 11611 0.76 0.172241
Target:  5'- -cACCGCGAagccaaCGCCgGGCCCGuCGACg -3'
miRNA:   3'- cuUGGCGCUg-----GCGGaCCGGGC-GCUGg -5'
13190 3' -62.3 NC_003401.1 + 118726 0.75 0.18078
Target:  5'- cGGCCGCG-CCGCUUGGCggCGCGGCUu -3'
miRNA:   3'- cUUGGCGCuGGCGGACCGg-GCGCUGG- -5'
13190 3' -62.3 NC_003401.1 + 122401 0.74 0.229282
Target:  5'- cGAACCGCGGaaagucuguuCCGCCgcgcaGCgCGCGGCCg -3'
miRNA:   3'- -CUUGGCGCU----------GGCGGac---CGgGCGCUGG- -5'
13190 3' -62.3 NC_003401.1 + 69295 0.72 0.281923
Target:  5'- --uCUGCGGCC-CCUGGCCCGCa--- -3'
miRNA:   3'- cuuGGCGCUGGcGGACCGGGCGcugg -5'
13190 3' -62.3 NC_003401.1 + 132456 0.72 0.294851
Target:  5'- -uGCCGCu-CCGCCgGGCCCGgcCGACUc -3'
miRNA:   3'- cuUGGCGcuGGCGGaCCGGGC--GCUGG- -5'
13190 3' -62.3 NC_003401.1 + 53024 0.72 0.301486
Target:  5'- -uGCUGuCGugCGCCgggGGCCCGCaGGCg -3'
miRNA:   3'- cuUGGC-GCugGCGGa--CCGGGCG-CUGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.