miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13204 5' -48.1 NC_003401.1 + 12011 0.67 0.997179
Target:  5'- aCAGGGAcuucacuaaccagACCGUGUUucuGCAAccggucGAGGGGCUc -3'
miRNA:   3'- -GUUUCU-------------UGGCGCAG---UGUU------UUUCCCGA- -5'
13204 5' -48.1 NC_003401.1 + 12504 0.7 0.974044
Target:  5'- gCGAAGAcCCGCGUUuCGGugguGGGCUg -3'
miRNA:   3'- -GUUUCUuGGCGCAGuGUUuuu-CCCGA- -5'
13204 5' -48.1 NC_003401.1 + 17651 0.71 0.952751
Target:  5'- -cGAGAACgGCGgcgcgCGCucGGAGGGCa -3'
miRNA:   3'- guUUCUUGgCGCa----GUGuuUUUCCCGa -5'
13204 5' -48.1 NC_003401.1 + 18635 0.71 0.967923
Target:  5'- --cAGAGCUguGCGUCACGGAGAGGuCUc -3'
miRNA:   3'- guuUCUUGG--CGCAGUGUUUUUCCcGA- -5'
13204 5' -48.1 NC_003401.1 + 18951 0.66 0.998904
Target:  5'- aCAA--GACCGCGUCcgaucgcgcugACAGAcgcgugcagccagGAGGGCUc -3'
miRNA:   3'- -GUUucUUGGCGCAG-----------UGUUU-------------UUCCCGA- -5'
13204 5' -48.1 NC_003401.1 + 19742 0.69 0.987323
Target:  5'- cCAccGAACCGCGgcgcgaaCACGAAGAuGGCUu -3'
miRNA:   3'- -GUuuCUUGGCGCa------GUGUUUUUcCCGA- -5'
13204 5' -48.1 NC_003401.1 + 20648 1.08 0.016264
Target:  5'- gCAAAGAACCGCGUCACAAAAAGGGCUc -3'
miRNA:   3'- -GUUUCUUGGCGCAGUGUUUUUCCCGA- -5'
13204 5' -48.1 NC_003401.1 + 20775 0.75 0.844199
Target:  5'- gAAGGAACCGCGUuccagggcgcggcccCGCGuuGGGGGUUg -3'
miRNA:   3'- gUUUCUUGGCGCA---------------GUGUuuUUCCCGA- -5'
13204 5' -48.1 NC_003401.1 + 20968 0.67 0.996704
Target:  5'- uGGAGGACuuuaCGCG-CGCGGAuugagucucGAGGGCUa -3'
miRNA:   3'- gUUUCUUG----GCGCaGUGUUU---------UUCCCGA- -5'
13204 5' -48.1 NC_003401.1 + 22438 0.71 0.967923
Target:  5'- ---uGGACaaGCGUCcCAAAAAGGGCa -3'
miRNA:   3'- guuuCUUGg-CGCAGuGUUUUUCCCGa -5'
13204 5' -48.1 NC_003401.1 + 23482 0.72 0.948311
Target:  5'- uCGGGGAGCCGgGU-GCAGGgcGGGGGCg -3'
miRNA:   3'- -GUUUCUUGGCgCAgUGUUU--UUCCCGa -5'
13204 5' -48.1 NC_003401.1 + 28060 0.74 0.865917
Target:  5'- ---cGAGCCGCGUCGCAGAccuccGGCg -3'
miRNA:   3'- guuuCUUGGCGCAGUGUUUuuc--CCGa -5'
13204 5' -48.1 NC_003401.1 + 28092 0.67 0.997228
Target:  5'- uCGGAGAauaguacgugGCCGCa-UACGGAGAGGGUUg -3'
miRNA:   3'- -GUUUCU----------UGGCGcaGUGUUUUUCCCGA- -5'
13204 5' -48.1 NC_003401.1 + 46512 0.75 0.849349
Target:  5'- gUAAAGAGCa-CGUCACAAGAuauacAGGGCg -3'
miRNA:   3'- -GUUUCUUGgcGCAGUGUUUU-----UCCCGa -5'
13204 5' -48.1 NC_003401.1 + 52613 0.66 0.999127
Target:  5'- ---cGAGCCGCGUC-CGAGcacGGCg -3'
miRNA:   3'- guuuCUUGGCGCAGuGUUUuucCCGa -5'
13204 5' -48.1 NC_003401.1 + 69741 0.77 0.744053
Target:  5'- -cGGGAugCGCGuUCGCGAGcAGGGCUu -3'
miRNA:   3'- guUUCUugGCGC-AGUGUUUuUCCCGA- -5'
13204 5' -48.1 NC_003401.1 + 71662 0.68 0.993726
Target:  5'- aUAAAGAGCCGCcugggacaGCAccGAGGGCc -3'
miRNA:   3'- -GUUUCUUGGCGcag-----UGUuuUUCCCGa -5'
13204 5' -48.1 NC_003401.1 + 72986 0.69 0.987156
Target:  5'- gAGGGAGCCGCGgagggguuuguagUCACAGGAGGcGuGCc -3'
miRNA:   3'- gUUUCUUGGCGC-------------AGUGUUUUUC-C-CGa -5'
13204 5' -48.1 NC_003401.1 + 73311 0.68 0.993726
Target:  5'- aGGAGAGCgCGCGUgC-CAAAgugGAGGGUUg -3'
miRNA:   3'- gUUUCUUG-GCGCA-GuGUUU---UUCCCGA- -5'
13204 5' -48.1 NC_003401.1 + 74025 0.68 0.99462
Target:  5'- cCGGAGAccgcCCGCGgCGC-AAAGGGGUUg -3'
miRNA:   3'- -GUUUCUu---GGCGCaGUGuUUUUCCCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.