Results 1 - 20 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13204 | 5' | -48.1 | NC_003401.1 | + | 20648 | 1.08 | 0.016264 |
Target: 5'- gCAAAGAACCGCGUCACAAAAAGGGCUc -3' miRNA: 3'- -GUUUCUUGGCGCAGUGUUUUUCCCGA- -5' |
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13204 | 5' | -48.1 | NC_003401.1 | + | 18951 | 0.66 | 0.998904 |
Target: 5'- aCAA--GACCGCGUCcgaucgcgcugACAGAcgcgugcagccagGAGGGCUc -3' miRNA: 3'- -GUUucUUGGCGCAG-----------UGUUU-------------UUCCCGA- -5' |
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13204 | 5' | -48.1 | NC_003401.1 | + | 132639 | 0.66 | 0.998404 |
Target: 5'- gAAAGGuggucuCCGCGcCGCcggGAGGGGGGCc -3' miRNA: 3'- gUUUCUu-----GGCGCaGUG---UUUUUCCCGa -5' |
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13204 | 5' | -48.1 | NC_003401.1 | + | 28092 | 0.67 | 0.997228 |
Target: 5'- uCGGAGAauaguacgugGCCGCa-UACGGAGAGGGUUg -3' miRNA: 3'- -GUUUCU----------UGGCGcaGUGUUUUUCCCGA- -5' |
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13204 | 5' | -48.1 | NC_003401.1 | + | 12011 | 0.67 | 0.997179 |
Target: 5'- aCAGGGAcuucacuaaccagACCGUGUUucuGCAAccggucGAGGGGCUc -3' miRNA: 3'- -GUUUCU-------------UGGCGCAG---UGUU------UUUCCCGA- -5' |
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13204 | 5' | -48.1 | NC_003401.1 | + | 109208 | 0.67 | 0.995902 |
Target: 5'- gCAccGAGCCcguaCGUCACAAAAcacacguagcauucGGGGCa -3' miRNA: 3'- -GUuuCUUGGc---GCAGUGUUUU--------------UCCCGa -5' |
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13204 | 5' | -48.1 | NC_003401.1 | + | 74025 | 0.68 | 0.99462 |
Target: 5'- cCGGAGAccgcCCGCGgCGC-AAAGGGGUUg -3' miRNA: 3'- -GUUUCUu---GGCGCaGUGuUUUUCCCGA- -5' |
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13204 | 5' | -48.1 | NC_003401.1 | + | 71662 | 0.68 | 0.993726 |
Target: 5'- aUAAAGAGCCGCcugggacaGCAccGAGGGCc -3' miRNA: 3'- -GUUUCUUGGCGcag-----UGUuuUUCCCGa -5' |
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13204 | 5' | -48.1 | NC_003401.1 | + | 72986 | 0.69 | 0.987156 |
Target: 5'- gAGGGAGCCGCGgagggguuuguagUCACAGGAGGcGuGCc -3' miRNA: 3'- gUUUCUUGGCGC-------------AGUGUUUUUC-C-CGa -5' |
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13204 | 5' | -48.1 | NC_003401.1 | + | 108714 | 0.69 | 0.985584 |
Target: 5'- aGAAGucCCGCGUC-CGA--AGGGCc -3' miRNA: 3'- gUUUCuuGGCGCAGuGUUuuUCCCGa -5' |
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13204 | 5' | -48.1 | NC_003401.1 | + | 69741 | 0.77 | 0.744053 |
Target: 5'- -cGGGAugCGCGuUCGCGAGcAGGGCUu -3' miRNA: 3'- guUUCUugGCGC-AGUGUUUuUCCCGA- -5' |
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13204 | 5' | -48.1 | NC_003401.1 | + | 92855 | 0.77 | 0.764646 |
Target: 5'- aCAAGGGACaCGCGUUugGGGGGcGGGCa -3' miRNA: 3'- -GUUUCUUG-GCGCAGugUUUUU-CCCGa -5' |
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13204 | 5' | -48.1 | NC_003401.1 | + | 85085 | 0.72 | 0.948311 |
Target: 5'- gGGGGAcCCGUGUCGCGcgGGGAGGGg- -3' miRNA: 3'- gUUUCUuGGCGCAGUGU--UUUUCCCga -5' |
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13204 | 5' | -48.1 | NC_003401.1 | + | 17651 | 0.71 | 0.952751 |
Target: 5'- -cGAGAACgGCGgcgcgCGCucGGAGGGCa -3' miRNA: 3'- guUUCUUGgCGCa----GUGuuUUUCCCGa -5' |
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13204 | 5' | -48.1 | NC_003401.1 | + | 127526 | 0.71 | 0.956521 |
Target: 5'- aCAAAGAggcgcagGCCGCccCGCGAGAccAGGGCUc -3' miRNA: 3'- -GUUUCU-------UGGCGcaGUGUUUU--UCCCGA- -5' |
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13204 | 5' | -48.1 | NC_003401.1 | + | 77843 | 0.71 | 0.960844 |
Target: 5'- --cGGAACCGUGgCACA---GGGGCg -3' miRNA: 3'- guuUCUUGGCGCaGUGUuuuUCCCGa -5' |
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13204 | 5' | -48.1 | NC_003401.1 | + | 18635 | 0.71 | 0.967923 |
Target: 5'- --cAGAGCUguGCGUCACGGAGAGGuCUc -3' miRNA: 3'- guuUCUUGG--CGCAGUGUUUUUCCcGA- -5' |
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13204 | 5' | -48.1 | NC_003401.1 | + | 52613 | 0.66 | 0.999127 |
Target: 5'- ---cGAGCCGCGUC-CGAGcacGGCg -3' miRNA: 3'- guuuCUUGGCGCAGuGUUUuucCCGa -5' |
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13204 | 5' | -48.1 | NC_003401.1 | + | 46512 | 0.75 | 0.849349 |
Target: 5'- gUAAAGAGCa-CGUCACAAGAuauacAGGGCg -3' miRNA: 3'- -GUUUCUUGgcGCAGUGUUUU-----UCCCGa -5' |
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13204 | 5' | -48.1 | NC_003401.1 | + | 28060 | 0.74 | 0.865917 |
Target: 5'- ---cGAGCCGCGUCGCAGAccuccGGCg -3' miRNA: 3'- guuuCUUGGCGCAGUGUUUuuc--CCGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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