miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13205 3' -48.6 NC_003401.1 + 20715 1.08 0.013806
Target:  5'- aUACGGAAACGGCUCGUCCAAAAACACc -3'
miRNA:   3'- -AUGCCUUUGCCGAGCAGGUUUUUGUG- -5'
13205 3' -48.6 NC_003401.1 + 115264 0.8 0.569968
Target:  5'- -gUGGGAGCGGCUCGgcUCCGGGGugGCu -3'
miRNA:   3'- auGCCUUUGCCGAGC--AGGUUUUugUG- -5'
13205 3' -48.6 NC_003401.1 + 115616 0.79 0.60255
Target:  5'- -gUGGggGCGGCUCGgcUCCGGGGugGCu -3'
miRNA:   3'- auGCCuuUGCCGAGC--AGGUUUUugUG- -5'
13205 3' -48.6 NC_003401.1 + 115648 0.79 0.60255
Target:  5'- -gUGGggGCGGCUCGgcUCCGGGGugGCu -3'
miRNA:   3'- auGCCuuUGCCGAGC--AGGUUUUugUG- -5'
13205 3' -48.6 NC_003401.1 + 115680 0.79 0.60255
Target:  5'- -gUGGggGCGGCUCGgcUCCGGGGugGCu -3'
miRNA:   3'- auGCCuuUGCCGAGC--AGGUUUUugUG- -5'
13205 3' -48.6 NC_003401.1 + 115712 0.79 0.60255
Target:  5'- -gUGGggGCGGCUCGgcUCCGGGGugGCu -3'
miRNA:   3'- auGCCuuUGCCGAGC--AGGUUUUugUG- -5'
13205 3' -48.6 NC_003401.1 + 115775 0.79 0.60255
Target:  5'- -gUGGggGCGGCUCGgcUCCGGGGugGCu -3'
miRNA:   3'- auGCCuuUGCCGAGC--AGGUUUUugUG- -5'
13205 3' -48.6 NC_003401.1 + 115807 0.79 0.60255
Target:  5'- -gUGGggGCGGCUCGgcUCCGGGGugGCu -3'
miRNA:   3'- auGCCuuUGCCGAGC--AGGUUUUugUG- -5'
13205 3' -48.6 NC_003401.1 + 115839 0.79 0.60255
Target:  5'- -gUGGggGCGGCUCGgcUCCGGGGugGCu -3'
miRNA:   3'- auGCCuuUGCCGAGC--AGGUUUUugUG- -5'
13205 3' -48.6 NC_003401.1 + 115871 0.79 0.60255
Target:  5'- -gUGGggGCGGCUCGgcUCCGGGGugGCu -3'
miRNA:   3'- auGCCuuUGCCGAGC--AGGUUUUugUG- -5'
13205 3' -48.6 NC_003401.1 + 115584 0.79 0.60255
Target:  5'- -gUGGggGCGGCUCGgcUCCGGGGugGCu -3'
miRNA:   3'- auGCCuuUGCCGAGC--AGGUUUUugUG- -5'
13205 3' -48.6 NC_003401.1 + 115552 0.79 0.60255
Target:  5'- -gUGGggGCGGCUCGgcUCCGGGGugGCu -3'
miRNA:   3'- auGCCuuUGCCGAGC--AGGUUUUugUG- -5'
13205 3' -48.6 NC_003401.1 + 115328 0.79 0.60255
Target:  5'- -gUGGggGCGGCUCGgcUCCGGGGugGCu -3'
miRNA:   3'- auGCCuuUGCCGAGC--AGGUUUUugUG- -5'
13205 3' -48.6 NC_003401.1 + 115360 0.79 0.60255
Target:  5'- -gUGGggGCGGCUCGgcUCCGGGGugGCu -3'
miRNA:   3'- auGCCuuUGCCGAGC--AGGUUUUugUG- -5'
13205 3' -48.6 NC_003401.1 + 115392 0.79 0.60255
Target:  5'- -gUGGggGCGGCUCGgcUCCGGGGugGCu -3'
miRNA:   3'- auGCCuuUGCCGAGC--AGGUUUUugUG- -5'
13205 3' -48.6 NC_003401.1 + 115424 0.79 0.60255
Target:  5'- -gUGGggGCGGCUCGgcUCCGGGGugGCu -3'
miRNA:   3'- auGCCuuUGCCGAGC--AGGUUUUugUG- -5'
13205 3' -48.6 NC_003401.1 + 115456 0.79 0.60255
Target:  5'- -gUGGggGCGGCUCGgcUCCGGGGugGCu -3'
miRNA:   3'- auGCCuuUGCCGAGC--AGGUUUUugUG- -5'
13205 3' -48.6 NC_003401.1 + 115488 0.79 0.60255
Target:  5'- -gUGGggGCGGCUCGgcUCCGGGGugGCu -3'
miRNA:   3'- auGCCuuUGCCGAGC--AGGUUUUugUG- -5'
13205 3' -48.6 NC_003401.1 + 115520 0.79 0.60255
Target:  5'- -gUGGggGCGGCUCGgcUCCGGGGugGCu -3'
miRNA:   3'- auGCCuuUGCCGAGC--AGGUUUUugUG- -5'
13205 3' -48.6 NC_003401.1 + 115903 0.79 0.60255
Target:  5'- -gUGGggGCGGCUCGgcUCCGGGGugGCu -3'
miRNA:   3'- auGCCuuUGCCGAGC--AGGUUUUugUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.