miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13205 3' -48.6 NC_003401.1 + 28 0.67 0.994384
Target:  5'- gACaGGGGACGGCgugugCGUgCuuguGAGACACc -3'
miRNA:   3'- aUG-CCUUUGCCGa----GCAgGu---UUUUGUG- -5'
13205 3' -48.6 NC_003401.1 + 4323 0.66 0.997884
Target:  5'- aAUGGGuacauagacauUGGCUUGUCCAGaAGAUACa -3'
miRNA:   3'- aUGCCUuu---------GCCGAGCAGGUU-UUUGUG- -5'
13205 3' -48.6 NC_003401.1 + 11263 0.66 0.998605
Target:  5'- aUGCGGAAGCauuccGGC-CGcCUcGAAACACu -3'
miRNA:   3'- -AUGCCUUUG-----CCGaGCaGGuUUUUGUG- -5'
13205 3' -48.6 NC_003401.1 + 13031 0.66 0.998308
Target:  5'- gACGGAcugcguGGCGGUggaccaggCGUCCGucAGCAUc -3'
miRNA:   3'- aUGCCU------UUGCCGa-------GCAGGUuuUUGUG- -5'
13205 3' -48.6 NC_003401.1 + 13164 0.73 0.908446
Target:  5'- cACGGAGAUGGCgUCGcCCAcGAACu- -3'
miRNA:   3'- aUGCCUUUGCCG-AGCaGGUuUUUGug -5'
13205 3' -48.6 NC_003401.1 + 14318 0.7 0.96718
Target:  5'- cGCGGAGACGugcuGCUCG-CCAAcGAACGg -3'
miRNA:   3'- aUGCCUUUGC----CGAGCaGGUU-UUUGUg -5'
13205 3' -48.6 NC_003401.1 + 14428 0.67 0.993463
Target:  5'- gGCGGGAACGGgaUCGUgaCCGGGAuCAUc -3'
miRNA:   3'- aUGCCUUUGCCg-AGCA--GGUUUUuGUG- -5'
13205 3' -48.6 NC_003401.1 + 14615 0.66 0.997083
Target:  5'- -uUGGAAGCGGCUagGUaCCuc-GGCACa -3'
miRNA:   3'- auGCCUUUGCCGAg-CA-GGuuuUUGUG- -5'
13205 3' -48.6 NC_003401.1 + 15860 0.73 0.908446
Target:  5'- cGCGGAGcuguUGGC-CGUCCGucAGGACGCg -3'
miRNA:   3'- aUGCCUUu---GCCGaGCAGGU--UUUUGUG- -5'
13205 3' -48.6 NC_003401.1 + 16223 0.68 0.991258
Target:  5'- aGCGGAAACcGUgaCGcUCCGGGGGCGCa -3'
miRNA:   3'- aUGCCUUUGcCGa-GC-AGGUUUUUGUG- -5'
13205 3' -48.6 NC_003401.1 + 16557 0.7 0.96718
Target:  5'- aGCGGAAACGGCU--UCCGcgGAAuaaccgucGCACg -3'
miRNA:   3'- aUGCCUUUGCCGAgcAGGU--UUU--------UGUG- -5'
13205 3' -48.6 NC_003401.1 + 17649 0.66 0.998308
Target:  5'- gGCGaGAAcgGCGGCgcgCGcUCgGAGGGCACc -3'
miRNA:   3'- aUGC-CUU--UGCCGa--GC-AGgUUUUUGUG- -5'
13205 3' -48.6 NC_003401.1 + 17888 0.69 0.985122
Target:  5'- gACGucuGAGACGcCUCG-CCGGAGACGCg -3'
miRNA:   3'- aUGC---CUUUGCcGAGCaGGUUUUUGUG- -5'
13205 3' -48.6 NC_003401.1 + 20105 0.73 0.901799
Target:  5'- cGCGGAGccaauggccGCGGCguccgCGUCCccGGGCGCg -3'
miRNA:   3'- aUGCCUU---------UGCCGa----GCAGGuuUUUGUG- -5'
13205 3' -48.6 NC_003401.1 + 20715 1.08 0.013806
Target:  5'- aUACGGAAACGGCUCGUCCAAAAACACc -3'
miRNA:   3'- -AUGCCUUUGCCGAGCAGGUUUUUGUG- -5'
13205 3' -48.6 NC_003401.1 + 20908 0.7 0.960018
Target:  5'- gAUGGAGAUGGC-CGUUU--GAGCACa -3'
miRNA:   3'- aUGCCUUUGCCGaGCAGGuuUUUGUG- -5'
13205 3' -48.6 NC_003401.1 + 22643 0.66 0.997554
Target:  5'- cACGGuuGACGGC--GUCCAuuAAUACc -3'
miRNA:   3'- aUGCCu-UUGCCGagCAGGUuuUUGUG- -5'
13205 3' -48.6 NC_003401.1 + 23464 0.75 0.802877
Target:  5'- gGCGGggGCGuGCUUGUgCAAAcgcccAACGCg -3'
miRNA:   3'- aUGCCuuUGC-CGAGCAgGUUU-----UUGUG- -5'
13205 3' -48.6 NC_003401.1 + 23581 0.67 0.995198
Target:  5'- gGCGGGGAuuuuucCGGgUCGUUCgGAGGGCACc -3'
miRNA:   3'- aUGCCUUU------GCCgAGCAGG-UUUUUGUG- -5'
13205 3' -48.6 NC_003401.1 + 27325 0.76 0.783488
Target:  5'- cUACGGAGuuGCGGCUgGUCUucuGGCGCu -3'
miRNA:   3'- -AUGCCUU--UGCCGAgCAGGuuuUUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.