miRNA display CGI


Results 21 - 40 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13215 5' -61.4 NC_003401.1 + 79858 0.7 0.448995
Target:  5'- uGCGGuugcaGACGCCucGGUGGCCGGgGCGGu -3'
miRNA:   3'- gUGCCc----UUGCGG--CCGCUGGUCgCGCU- -5'
13215 5' -61.4 NC_003401.1 + 118436 0.69 0.475899
Target:  5'- -cCGGGcaGAgGCCGGcCGGCCaaaGGUGCGAu -3'
miRNA:   3'- guGCCC--UUgCGGCC-GCUGG---UCGCGCU- -5'
13215 5' -61.4 NC_003401.1 + 47805 0.68 0.541521
Target:  5'- cCGCGacGGAuCGCCGGUugaGACCAuGCGCa- -3'
miRNA:   3'- -GUGC--CCUuGCGGCCG---CUGGU-CGCGcu -5'
13215 5' -61.4 NC_003401.1 + 11262 0.68 0.555031
Target:  5'- uGCGGaAGCauuCCGGCcgccucgaaacacugGGCCAGCGCGAc -3'
miRNA:   3'- gUGCCcUUGc--GGCCG---------------CUGGUCGCGCU- -5'
13215 5' -61.4 NC_003401.1 + 66668 0.68 0.560851
Target:  5'- aGCGGGGAUGuCCgGGUGgaaACCAGcCGCGu -3'
miRNA:   3'- gUGCCCUUGC-GG-CCGC---UGGUC-GCGCu -5'
13215 5' -61.4 NC_003401.1 + 132669 0.67 0.570588
Target:  5'- --gGGGGGCGUCGG-GGCgCGGCGCc- -3'
miRNA:   3'- gugCCCUUGCGGCCgCUG-GUCGCGcu -5'
13215 5' -61.4 NC_003401.1 + 18456 0.67 0.570588
Target:  5'- cCACGGGGcagggcGCGgCGGCGGCCAcaaGgGUGu -3'
miRNA:   3'- -GUGCCCU------UGCgGCCGCUGGU---CgCGCu -5'
13215 5' -61.4 NC_003401.1 + 132567 0.67 0.579387
Target:  5'- cCGCGGGAcccccggccccGCGaaccgaaagcggcCCGGCG-CgCGGCGCGGg -3'
miRNA:   3'- -GUGCCCU-----------UGC-------------GGCCGCuG-GUCGCGCU- -5'
13215 5' -61.4 NC_003401.1 + 27704 0.67 0.590179
Target:  5'- gCGCGGGcc--CCGGUggaGGCCAGCGCa- -3'
miRNA:   3'- -GUGCCCuugcGGCCG---CUGGUCGCGcu -5'
13215 5' -61.4 NC_003401.1 + 23482 0.67 0.590179
Target:  5'- -uCGGGGA-GCCGG-GugCAGgGCGGg -3'
miRNA:   3'- guGCCCUUgCGGCCgCugGUCgCGCU- -5'
13215 5' -61.4 NC_003401.1 + 7179 0.68 0.531938
Target:  5'- cCACGuGAACGgccuguUCGGcCGACCAGCGCu- -3'
miRNA:   3'- -GUGCcCUUGC------GGCC-GCUGGUCGCGcu -5'
13215 5' -61.4 NC_003401.1 + 21498 0.68 0.522418
Target:  5'- gCACGGGucccGCGCCuuuuuGGCGGCgCAGgGCu- -3'
miRNA:   3'- -GUGCCCu---UGCGG-----CCGCUG-GUCgCGcu -5'
13215 5' -61.4 NC_003401.1 + 19372 0.66 0.678966
Target:  5'- uCACGGGGcCGUCGGUGACgAuuguuuccgggGgGCGGg -3'
miRNA:   3'- -GUGCCCUuGCGGCCGCUGgU-----------CgCGCU- -5'
13215 5' -61.4 NC_003401.1 + 8921 0.73 0.267876
Target:  5'- uCACGGGAcgcagGCGCCcuguggcGGCGACCGGCugacGCGc -3'
miRNA:   3'- -GUGCCCU-----UGCGG-------CCGCUGGUCG----CGCu -5'
13215 5' -61.4 NC_003401.1 + 132755 0.72 0.328488
Target:  5'- --aGGGGAgGCCGGCGgaggaccgccauGCCGgGCGCGGc -3'
miRNA:   3'- gugCCCUUgCGGCCGC------------UGGU-CGCGCU- -5'
13215 5' -61.4 NC_003401.1 + 103295 0.72 0.343098
Target:  5'- cCAUGGGAACGgCGGUGGCCucGGacgGCGGu -3'
miRNA:   3'- -GUGCCCUUGCgGCCGCUGG--UCg--CGCU- -5'
13215 5' -61.4 NC_003401.1 + 122543 0.71 0.368994
Target:  5'- cCGCGGuu-CGCCGGCGACaagguaagggggccgCGGCGCGc -3'
miRNA:   3'- -GUGCCcuuGCGGCCGCUG---------------GUCGCGCu -5'
13215 5' -61.4 NC_003401.1 + 118117 0.71 0.397838
Target:  5'- aAUGGGGACGgUGGgGGCC-GCGCGc -3'
miRNA:   3'- gUGCCCUUGCgGCCgCUGGuCGCGCu -5'
13215 5' -61.4 NC_003401.1 + 132511 0.7 0.414475
Target:  5'- -cCGGGGGCGgCGGCcgcgggcccgGGCCGGCGgGGc -3'
miRNA:   3'- guGCCCUUGCgGCCG----------CUGGUCGCgCU- -5'
13215 5' -61.4 NC_003401.1 + 14218 0.69 0.484126
Target:  5'- -cCGGGGGCGCuagaggguguCGGgGACCGgccggguGCGCGAa -3'
miRNA:   3'- guGCCCUUGCG----------GCCgCUGGU-------CGCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.