Results 1 - 20 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13215 | 5' | -61.4 | NC_003401.1 | + | 121150 | 0.66 | 0.669143 |
Target: 5'- uCGCGGcGGGCGCgGGgGGCgCggggGGCGCGc -3' miRNA: 3'- -GUGCC-CUUGCGgCCgCUG-G----UCGCGCu -5' |
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13215 | 5' | -61.4 | NC_003401.1 | + | 89178 | 0.68 | 0.531938 |
Target: 5'- -cCGGGAACG--GGUGACCGG-GCGAg -3' miRNA: 3'- guGCCCUUGCggCCGCUGGUCgCGCU- -5' |
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13215 | 5' | -61.4 | NC_003401.1 | + | 15024 | 0.68 | 0.560851 |
Target: 5'- gGCGGGAuuuCCGuGCG-CCAcGCGCGAc -3' miRNA: 3'- gUGCCCUugcGGC-CGCuGGU-CGCGCU- -5' |
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13215 | 5' | -61.4 | NC_003401.1 | + | 22593 | 0.67 | 0.570588 |
Target: 5'- gACGGGGuCGCuCGuGCGuugccACCAGCGCc- -3' miRNA: 3'- gUGCCCUuGCG-GC-CGC-----UGGUCGCGcu -5' |
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13215 | 5' | -61.4 | NC_003401.1 | + | 125122 | 0.67 | 0.580366 |
Target: 5'- gACGGGuuGCGUgGGUaGugCuGCGCGAa -3' miRNA: 3'- gUGCCCu-UGCGgCCG-CugGuCGCGCU- -5' |
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13215 | 5' | -61.4 | NC_003401.1 | + | 118103 | 0.67 | 0.590179 |
Target: 5'- -uCGGuGAccCGCCGGCGACCccGgGCGGc -3' miRNA: 3'- guGCC-CUu-GCGGCCGCUGGu-CgCGCU- -5' |
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13215 | 5' | -61.4 | NC_003401.1 | + | 118184 | 0.67 | 0.590179 |
Target: 5'- cCGCGGGcGACcCCGGCGGCggCAcCGCGGg -3' miRNA: 3'- -GUGCCC-UUGcGGCCGCUG--GUcGCGCU- -5' |
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13215 | 5' | -61.4 | NC_003401.1 | + | 117879 | 0.66 | 0.629649 |
Target: 5'- gAUGGGuACGCgCGGCGACCAuCGa-- -3' miRNA: 3'- gUGCCCuUGCG-GCCGCUGGUcGCgcu -5' |
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13215 | 5' | -61.4 | NC_003401.1 | + | 61116 | 0.66 | 0.669143 |
Target: 5'- uUACGGGAACuGCUGGUGcugggaaaaguACCAGCa--- -3' miRNA: 3'- -GUGCCCUUG-CGGCCGC-----------UGGUCGcgcu -5' |
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13215 | 5' | -61.4 | NC_003401.1 | + | 23633 | 0.69 | 0.503581 |
Target: 5'- aCACGGG--CGCCGcgaGCGGCCGGCagGUGGc -3' miRNA: 3'- -GUGCCCuuGCGGC---CGCUGGUCG--CGCU- -5' |
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13215 | 5' | -61.4 | NC_003401.1 | + | 126539 | 0.69 | 0.485044 |
Target: 5'- gCACGGGGugcUGCCGGcCGACguGaugGCGAa -3' miRNA: 3'- -GUGCCCUu--GCGGCC-GCUGguCg--CGCU- -5' |
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13215 | 5' | -61.4 | NC_003401.1 | + | 118436 | 0.69 | 0.475899 |
Target: 5'- -cCGGGcaGAgGCCGGcCGGCCaaaGGUGCGAu -3' miRNA: 3'- guGCCC--UUgCGGCC-GCUGG---UCGCGCU- -5' |
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13215 | 5' | -61.4 | NC_003401.1 | + | 121926 | 0.78 | 0.143942 |
Target: 5'- aGCgGGGGGCGCgggugCGGCGGCUGGCGCGGc -3' miRNA: 3'- gUG-CCCUUGCG-----GCCGCUGGUCGCGCU- -5' |
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13215 | 5' | -61.4 | NC_003401.1 | + | 27665 | 0.75 | 0.202146 |
Target: 5'- gGCGGGGGCuggaguuGCCGGCugcguggcgaGACCGGCGUGGu -3' miRNA: 3'- gUGCCCUUG-------CGGCCG----------CUGGUCGCGCU- -5' |
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13215 | 5' | -61.4 | NC_003401.1 | + | 27529 | 0.73 | 0.300664 |
Target: 5'- aCACGGGGgccggcuguGCGCUGGCcuccaccggGGCCcGCGCGGa -3' miRNA: 3'- -GUGCCCU---------UGCGGCCG---------CUGGuCGCGCU- -5' |
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13215 | 5' | -61.4 | NC_003401.1 | + | 132678 | 0.72 | 0.328488 |
Target: 5'- -cCGGG-GCGCCucGGCGGggcCCGGCGCGGg -3' miRNA: 3'- guGCCCuUGCGG--CCGCU---GGUCGCGCU- -5' |
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13215 | 5' | -61.4 | NC_003401.1 | + | 23819 | 0.7 | 0.406103 |
Target: 5'- gCGCGGccauuGGACGCUGGCGGCagccaaugGGCGCGu -3' miRNA: 3'- -GUGCC-----CUUGCGGCCGCUGg-------UCGCGCu -5' |
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13215 | 5' | -61.4 | NC_003401.1 | + | 108677 | 0.7 | 0.413633 |
Target: 5'- gCACGGGAcgGUCGGCG-CCAGUucucgcaGCGAg -3' miRNA: 3'- -GUGCCCUugCGGCCGCuGGUCG-------CGCU- -5' |
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13215 | 5' | -61.4 | NC_003401.1 | + | 119855 | 0.7 | 0.4376 |
Target: 5'- gACGGGGGCagaccGCCGGUGGCCGGguucacgauggcuuUGUGAa -3' miRNA: 3'- gUGCCCUUG-----CGGCCGCUGGUC--------------GCGCU- -5' |
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13215 | 5' | -61.4 | NC_003401.1 | + | 79858 | 0.7 | 0.448995 |
Target: 5'- uGCGGuugcaGACGCCucGGUGGCCGGgGCGGu -3' miRNA: 3'- gUGCCc----UUGCGG--CCGCUGGUCgCGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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