miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13215 5' -61.4 NC_003401.1 + 43163 1.07 0.001197
Target:  5'- uCACGGGAACGCCGGCGACCAGCGCGAc -3'
miRNA:   3'- -GUGCCCUUGCGGCCGCUGGUCGCGCU- -5'
13215 5' -61.4 NC_003401.1 + 121926 0.78 0.143942
Target:  5'- aGCgGGGGGCGCgggugCGGCGGCUGGCGCGGc -3'
miRNA:   3'- gUG-CCCUUGCG-----GCCGCUGGUCGCGCU- -5'
13215 5' -61.4 NC_003401.1 + 132460 0.77 0.16287
Target:  5'- --gGGGGAgGCCGGCGGcgcCCGGCGCGc -3'
miRNA:   3'- gugCCCUUgCGGCCGCU---GGUCGCGCu -5'
13215 5' -61.4 NC_003401.1 + 27665 0.75 0.202146
Target:  5'- gGCGGGGGCuggaguuGCCGGCugcguggcgaGACCGGCGUGGu -3'
miRNA:   3'- gUGCCCUUG-------CGGCCG----------CUGGUCGCGCU- -5'
13215 5' -61.4 NC_003401.1 + 8921 0.73 0.267876
Target:  5'- uCACGGGAcgcagGCGCCcuguggcGGCGACCGGCugacGCGc -3'
miRNA:   3'- -GUGCCCU-----UGCGG-------CCGCUGGUCG----CGCu -5'
13215 5' -61.4 NC_003401.1 + 27529 0.73 0.300664
Target:  5'- aCACGGGGgccggcuguGCGCUGGCcuccaccggGGCCcGCGCGGa -3'
miRNA:   3'- -GUGCCCU---------UGCGGCCG---------CUGGuCGCGCU- -5'
13215 5' -61.4 NC_003401.1 + 132755 0.72 0.328488
Target:  5'- --aGGGGAgGCCGGCGgaggaccgccauGCCGgGCGCGGc -3'
miRNA:   3'- gugCCCUUgCGGCCGC------------UGGU-CGCGCU- -5'
13215 5' -61.4 NC_003401.1 + 132678 0.72 0.328488
Target:  5'- -cCGGG-GCGCCucGGCGGggcCCGGCGCGGg -3'
miRNA:   3'- guGCCCuUGCGG--CCGCU---GGUCGCGCU- -5'
13215 5' -61.4 NC_003401.1 + 103295 0.72 0.343098
Target:  5'- cCAUGGGAACGgCGGUGGCCucGGacgGCGGu -3'
miRNA:   3'- -GUGCCCUUGCgGCCGCUGG--UCg--CGCU- -5'
13215 5' -61.4 NC_003401.1 + 122543 0.71 0.368994
Target:  5'- cCGCGGuu-CGCCGGCGACaagguaagggggccgCGGCGCGc -3'
miRNA:   3'- -GUGCCcuuGCGGCCGCUG---------------GUCGCGCu -5'
13215 5' -61.4 NC_003401.1 + 118117 0.71 0.397838
Target:  5'- aAUGGGGACGgUGGgGGCC-GCGCGc -3'
miRNA:   3'- gUGCCCUUGCgGCCgCUGGuCGCGCu -5'
13215 5' -61.4 NC_003401.1 + 23819 0.7 0.406103
Target:  5'- gCGCGGccauuGGACGCUGGCGGCagccaaugGGCGCGu -3'
miRNA:   3'- -GUGCC-----CUUGCGGCCGCUGg-------UCGCGCu -5'
13215 5' -61.4 NC_003401.1 + 108677 0.7 0.413633
Target:  5'- gCACGGGAcgGUCGGCG-CCAGUucucgcaGCGAg -3'
miRNA:   3'- -GUGCCCUugCGGCCGCuGGUCG-------CGCU- -5'
13215 5' -61.4 NC_003401.1 + 132511 0.7 0.414475
Target:  5'- -cCGGGGGCGgCGGCcgcgggcccgGGCCGGCGgGGc -3'
miRNA:   3'- guGCCCUUGCgGCCG----------CUGGUCGCgCU- -5'
13215 5' -61.4 NC_003401.1 + 119855 0.7 0.4376
Target:  5'- gACGGGGGCagaccGCCGGUGGCCGGguucacgauggcuuUGUGAa -3'
miRNA:   3'- gUGCCCUUG-----CGGCCGCUGGUC--------------GCGCU- -5'
13215 5' -61.4 NC_003401.1 + 79858 0.7 0.448995
Target:  5'- uGCGGuugcaGACGCCucGGUGGCCGGgGCGGu -3'
miRNA:   3'- gUGCCc----UUGCGG--CCGCUGGUCgCGCU- -5'
13215 5' -61.4 NC_003401.1 + 118436 0.69 0.475899
Target:  5'- -cCGGGcaGAgGCCGGcCGGCCaaaGGUGCGAu -3'
miRNA:   3'- guGCCC--UUgCGGCC-GCUGG---UCGCGCU- -5'
13215 5' -61.4 NC_003401.1 + 14218 0.69 0.484126
Target:  5'- -cCGGGGGCGCuagaggguguCGGgGACCGgccggguGCGCGAa -3'
miRNA:   3'- guGCCCUUGCG----------GCCgCUGGU-------CGCGCU- -5'
13215 5' -61.4 NC_003401.1 + 126539 0.69 0.485044
Target:  5'- gCACGGGGugcUGCCGGcCGACguGaugGCGAa -3'
miRNA:   3'- -GUGCCCUu--GCGGCC-GCUGguCg--CGCU- -5'
13215 5' -61.4 NC_003401.1 + 23633 0.69 0.503581
Target:  5'- aCACGGG--CGCCGcgaGCGGCCGGCagGUGGc -3'
miRNA:   3'- -GUGCCCuuGCGGC---CGCUGGUCG--CGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.