miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13215 5' -61.4 NC_003401.1 + 1474 0.66 0.678966
Target:  5'- cCGCGGG-ACGUCuaCGGCCAGagaccaGCGAa -3'
miRNA:   3'- -GUGCCCuUGCGGccGCUGGUCg-----CGCU- -5'
13215 5' -61.4 NC_003401.1 + 7179 0.68 0.531938
Target:  5'- cCACGuGAACGgccuguUCGGcCGACCAGCGCu- -3'
miRNA:   3'- -GUGCcCUUGC------GGCC-GCUGGUCGCGcu -5'
13215 5' -61.4 NC_003401.1 + 8921 0.73 0.267876
Target:  5'- uCACGGGAcgcagGCGCCcuguggcGGCGACCGGCugacGCGc -3'
miRNA:   3'- -GUGCCCU-----UGCGG-------CCGCUGGUCG----CGCu -5'
13215 5' -61.4 NC_003401.1 + 11262 0.68 0.555031
Target:  5'- uGCGGaAGCauuCCGGCcgccucgaaacacugGGCCAGCGCGAc -3'
miRNA:   3'- gUGCCcUUGc--GGCCG---------------CUGGUCGCGCU- -5'
13215 5' -61.4 NC_003401.1 + 14218 0.69 0.484126
Target:  5'- -cCGGGGGCGCuagaggguguCGGgGACCGgccggguGCGCGAa -3'
miRNA:   3'- guGCCCUUGCG----------GCCgCUGGU-------CGCGCU- -5'
13215 5' -61.4 NC_003401.1 + 14315 0.66 0.629649
Target:  5'- gGCGGGAGCaUCGGUG-CCucuGUGUGAg -3'
miRNA:   3'- gUGCCCUUGcGGCCGCuGGu--CGCGCU- -5'
13215 5' -61.4 NC_003401.1 + 15024 0.68 0.560851
Target:  5'- gGCGGGAuuuCCGuGCG-CCAcGCGCGAc -3'
miRNA:   3'- gUGCCCUugcGGC-CGCuGGU-CGCGCU- -5'
13215 5' -61.4 NC_003401.1 + 18456 0.67 0.570588
Target:  5'- cCACGGGGcagggcGCGgCGGCGGCCAcaaGgGUGu -3'
miRNA:   3'- -GUGCCCU------UGCgGCCGCUGGU---CgCGCu -5'
13215 5' -61.4 NC_003401.1 + 19372 0.66 0.678966
Target:  5'- uCACGGGGcCGUCGGUGACgAuuguuuccgggGgGCGGg -3'
miRNA:   3'- -GUGCCCUuGCGGCCGCUGgU-----------CgCGCU- -5'
13215 5' -61.4 NC_003401.1 + 20756 0.66 0.649422
Target:  5'- gCGCGGccccgcguuGGGgGuuGGCGGCCGGUGUGu -3'
miRNA:   3'- -GUGCC---------CUUgCggCCGCUGGUCGCGCu -5'
13215 5' -61.4 NC_003401.1 + 21498 0.68 0.522418
Target:  5'- gCACGGGucccGCGCCuuuuuGGCGGCgCAGgGCu- -3'
miRNA:   3'- -GUGCCCu---UGCGG-----CCGCUG-GUCgCGcu -5'
13215 5' -61.4 NC_003401.1 + 22593 0.67 0.570588
Target:  5'- gACGGGGuCGCuCGuGCGuugccACCAGCGCc- -3'
miRNA:   3'- gUGCCCUuGCG-GC-CGC-----UGGUCGCGcu -5'
13215 5' -61.4 NC_003401.1 + 23482 0.67 0.590179
Target:  5'- -uCGGGGA-GCCGG-GugCAGgGCGGg -3'
miRNA:   3'- guGCCCUUgCGGCCgCugGUCgCGCU- -5'
13215 5' -61.4 NC_003401.1 + 23633 0.69 0.503581
Target:  5'- aCACGGG--CGCCGcgaGCGGCCGGCagGUGGc -3'
miRNA:   3'- -GUGCCCuuGCGGC---CGCUGGUCG--CGCU- -5'
13215 5' -61.4 NC_003401.1 + 23819 0.7 0.406103
Target:  5'- gCGCGGccauuGGACGCUGGCGGCagccaaugGGCGCGu -3'
miRNA:   3'- -GUGCC-----CUUGCGGCCGCUGg-------UCGCGCu -5'
13215 5' -61.4 NC_003401.1 + 27529 0.73 0.300664
Target:  5'- aCACGGGGgccggcuguGCGCUGGCcuccaccggGGCCcGCGCGGa -3'
miRNA:   3'- -GUGCCCU---------UGCGGCCG---------CUGGuCGCGCU- -5'
13215 5' -61.4 NC_003401.1 + 27665 0.75 0.202146
Target:  5'- gGCGGGGGCuggaguuGCCGGCugcguggcgaGACCGGCGUGGu -3'
miRNA:   3'- gUGCCCUUG-------CGGCCG----------CUGGUCGCGCU- -5'
13215 5' -61.4 NC_003401.1 + 27704 0.67 0.590179
Target:  5'- gCGCGGGcc--CCGGUggaGGCCAGCGCa- -3'
miRNA:   3'- -GUGCCCuugcGGCCG---CUGGUCGCGcu -5'
13215 5' -61.4 NC_003401.1 + 43163 1.07 0.001197
Target:  5'- uCACGGGAACGCCGGCGACCAGCGCGAc -3'
miRNA:   3'- -GUGCCCUUGCGGCCGCUGGUCGCGCU- -5'
13215 5' -61.4 NC_003401.1 + 47805 0.68 0.541521
Target:  5'- cCGCGacGGAuCGCCGGUugaGACCAuGCGCa- -3'
miRNA:   3'- -GUGC--CCUuGCGGCCG---CUGGU-CGCGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.