miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13248 5' -61.1 NC_003401.1 + 111375 1.09 0.001039
Target:  5'- cCGCACACCCGGACGCCGGUCCGGUUCu -3'
miRNA:   3'- -GCGUGUGGGCCUGCGGCCAGGCCAAG- -5'
13248 5' -61.1 NC_003401.1 + 119244 0.75 0.230565
Target:  5'- cCGCcaacGCACCCGGuuaACGCCGGUgCCGGc-- -3'
miRNA:   3'- -GCG----UGUGGGCC---UGCGGCCA-GGCCaag -5'
13248 5' -61.1 NC_003401.1 + 50190 0.73 0.317284
Target:  5'- aCGCGagcCCCGGACGgCGG-CCGaGUUCg -3'
miRNA:   3'- -GCGUgu-GGGCCUGCgGCCaGGC-CAAG- -5'
13248 5' -61.1 NC_003401.1 + 123377 0.73 0.317284
Target:  5'- uGCACAgCUCGGgcggcACGCCGGUCCaGUUg -3'
miRNA:   3'- gCGUGU-GGGCC-----UGCGGCCAGGcCAAg -5'
13248 5' -61.1 NC_003401.1 + 132498 0.72 0.329345
Target:  5'- cCGCGgGCCCGGGCcggcggggcggaggGCCGGgagCCGGg-- -3'
miRNA:   3'- -GCGUgUGGGCCUG--------------CGGCCa--GGCCaag -5'
13248 5' -61.1 NC_003401.1 + 98769 0.72 0.361342
Target:  5'- uGCGauaACCUGGGCGgacacgggaccCUGGUCUGGUUCg -3'
miRNA:   3'- gCGUg--UGGGCCUGC-----------GGCCAGGCCAAG- -5'
13248 5' -61.1 NC_003401.1 + 132450 0.71 0.401183
Target:  5'- gGCgGCGCCCGGcGCGCgGGcCCGGg-- -3'
miRNA:   3'- gCG-UGUGGGCC-UGCGgCCaGGCCaag -5'
13248 5' -61.1 NC_003401.1 + 74178 0.71 0.417884
Target:  5'- --uGCGCCgCGGGCGgucuCCGGUUCGGUUUg -3'
miRNA:   3'- gcgUGUGG-GCCUGC----GGCCAGGCCAAG- -5'
13248 5' -61.1 NC_003401.1 + 119514 0.7 0.426392
Target:  5'- gCGUAUcgUCGGACGCCGG-CCGGUc- -3'
miRNA:   3'- -GCGUGugGGCCUGCGGCCaGGCCAag -5'
13248 5' -61.1 NC_003401.1 + 118421 0.7 0.443711
Target:  5'- cCGCAUcCUCGGugGCCGGgcagaggCCGGc-- -3'
miRNA:   3'- -GCGUGuGGGCCugCGGCCa------GGCCaag -5'
13248 5' -61.1 NC_003401.1 + 107786 0.7 0.452518
Target:  5'- -cCGCGCCCGGugGCgCGGacCCGGg-- -3'
miRNA:   3'- gcGUGUGGGCCugCG-GCCa-GGCCaag -5'
13248 5' -61.1 NC_003401.1 + 132389 0.7 0.452518
Target:  5'- cCGCGCGCCgGGcCGCU--UUCGGUUCg -3'
miRNA:   3'- -GCGUGUGGgCCuGCGGccAGGCCAAG- -5'
13248 5' -61.1 NC_003401.1 + 128032 0.7 0.461419
Target:  5'- gGCGCGCaCCGGcACGCCuGUCCucGGUg- -3'
miRNA:   3'- gCGUGUG-GGCC-UGCGGcCAGG--CCAag -5'
13248 5' -61.1 NC_003401.1 + 132384 0.69 0.479493
Target:  5'- cCGCG-GCCCGGcggcgGCGCCGG-CCGGg-- -3'
miRNA:   3'- -GCGUgUGGGCC-----UGCGGCCaGGCCaag -5'
13248 5' -61.1 NC_003401.1 + 14075 0.69 0.479493
Target:  5'- aGCGCcCCCGGGCGUccgCGGUCUGuaUCa -3'
miRNA:   3'- gCGUGuGGGCCUGCG---GCCAGGCcaAG- -5'
13248 5' -61.1 NC_003401.1 + 79864 0.69 0.497907
Target:  5'- uGCagACGCCuCGGugGCCGGggCGGUc- -3'
miRNA:   3'- gCG--UGUGG-GCCugCGGCCagGCCAag -5'
13248 5' -61.1 NC_003401.1 + 17666 0.69 0.507232
Target:  5'- aGCACgaACCCGGgggccacgcGCGCCGcGUCCGcGUc- -3'
miRNA:   3'- gCGUG--UGGGCC---------UGCGGC-CAGGC-CAag -5'
13248 5' -61.1 NC_003401.1 + 19644 0.69 0.51663
Target:  5'- uCGCGCGCCCuGGAgcUGCCGGg-CGGg-- -3'
miRNA:   3'- -GCGUGUGGG-CCU--GCGGCCagGCCaag -5'
13248 5' -61.1 NC_003401.1 + 14686 0.69 0.526098
Target:  5'- aCGCACACgCUGG-UGCCG-UCCucGGUUCg -3'
miRNA:   3'- -GCGUGUG-GGCCuGCGGCcAGG--CCAAG- -5'
13248 5' -61.1 NC_003401.1 + 88518 0.69 0.526098
Target:  5'- aCGCgGCACCUGuuaGGCGCCGGcgCCgacaGGUUCu -3'
miRNA:   3'- -GCG-UGUGGGC---CUGCGGCCa-GG----CCAAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.