Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13248 | 5' | -61.1 | NC_003401.1 | + | 111375 | 1.09 | 0.001039 |
Target: 5'- cCGCACACCCGGACGCCGGUCCGGUUCu -3' miRNA: 3'- -GCGUGUGGGCCUGCGGCCAGGCCAAG- -5' |
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13248 | 5' | -61.1 | NC_003401.1 | + | 132651 | 0.66 | 0.702019 |
Target: 5'- cCGCGcCGCCgGGAgggggGCCGGggcCCGGggCg -3' miRNA: 3'- -GCGU-GUGGgCCUg----CGGCCa--GGCCaaG- -5' |
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13248 | 5' | -61.1 | NC_003401.1 | + | 132220 | 0.66 | 0.702019 |
Target: 5'- --gGCGCCCGGccgGCGCCGccgCCGGg-- -3' miRNA: 3'- gcgUGUGGGCC---UGCGGCca-GGCCaag -5' |
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13248 | 5' | -61.1 | NC_003401.1 | + | 14808 | 0.66 | 0.672752 |
Target: 5'- aGUcaaACgUGGACGCCGuucgCCGGUUCg -3' miRNA: 3'- gCGug-UGgGCCUGCGGCca--GGCCAAG- -5' |
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13248 | 5' | -61.1 | NC_003401.1 | + | 105713 | 0.66 | 0.662924 |
Target: 5'- uGCAU-CUCGGgucaaucgacgACGCCGGUCCaGGcUUCa -3' miRNA: 3'- gCGUGuGGGCC-----------UGCGGCCAGG-CC-AAG- -5' |
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13248 | 5' | -61.1 | NC_003401.1 | + | 132515 | 0.66 | 0.653073 |
Target: 5'- gCGcCGCGCCCcGACGCCccccgGGcCCGGggCc -3' miRNA: 3'- -GC-GUGUGGGcCUGCGG-----CCaGGCCaaG- -5' |
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13248 | 5' | -61.1 | NC_003401.1 | + | 50016 | 0.66 | 0.653073 |
Target: 5'- uCGCACacaucagcgaACUCGGcCGCCG-UCCGGggCu -3' miRNA: 3'- -GCGUG----------UGGGCCuGCGGCcAGGCCaaG- -5' |
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13248 | 5' | -61.1 | NC_003401.1 | + | 133554 | 0.67 | 0.643207 |
Target: 5'- ---cCGCCCGGAcCGCCGGgcacCCGGc-- -3' miRNA: 3'- gcguGUGGGCCU-GCGGCCa---GGCCaag -5' |
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13248 | 5' | -61.1 | NC_003401.1 | + | 14044 | 0.67 | 0.613587 |
Target: 5'- uCGCGCACCCG---GCCGGUCCc---- -3' miRNA: 3'- -GCGUGUGGGCcugCGGCCAGGccaag -5' |
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13248 | 5' | -61.1 | NC_003401.1 | + | 132299 | 0.68 | 0.53563 |
Target: 5'- cCGCGCGCCgGGcgcCGCCGGccucccCCGGcUCc -3' miRNA: 3'- -GCGUGUGGgCCu--GCGGCCa-----GGCCaAG- -5' |
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13248 | 5' | -61.1 | NC_003401.1 | + | 119514 | 0.7 | 0.426392 |
Target: 5'- gCGUAUcgUCGGACGCCGG-CCGGUc- -3' miRNA: 3'- -GCGUGugGGCCUGCGGCCaGGCCAag -5' |
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13248 | 5' | -61.1 | NC_003401.1 | + | 118421 | 0.7 | 0.443711 |
Target: 5'- cCGCAUcCUCGGugGCCGGgcagaggCCGGc-- -3' miRNA: 3'- -GCGUGuGGGCCugCGGCCa------GGCCaag -5' |
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13248 | 5' | -61.1 | NC_003401.1 | + | 132389 | 0.7 | 0.452518 |
Target: 5'- cCGCGCGCCgGGcCGCU--UUCGGUUCg -3' miRNA: 3'- -GCGUGUGGgCCuGCGGccAGGCCAAG- -5' |
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13248 | 5' | -61.1 | NC_003401.1 | + | 14075 | 0.69 | 0.479493 |
Target: 5'- aGCGCcCCCGGGCGUccgCGGUCUGuaUCa -3' miRNA: 3'- gCGUGuGGGCCUGCG---GCCAGGCcaAG- -5' |
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13248 | 5' | -61.1 | NC_003401.1 | + | 79864 | 0.69 | 0.497907 |
Target: 5'- uGCagACGCCuCGGugGCCGGggCGGUc- -3' miRNA: 3'- gCG--UGUGG-GCCugCGGCCagGCCAag -5' |
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13248 | 5' | -61.1 | NC_003401.1 | + | 19644 | 0.69 | 0.51663 |
Target: 5'- uCGCGCGCCCuGGAgcUGCCGGg-CGGg-- -3' miRNA: 3'- -GCGUGUGGG-CCU--GCGGCCagGCCaag -5' |
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13248 | 5' | -61.1 | NC_003401.1 | + | 88518 | 0.69 | 0.526098 |
Target: 5'- aCGCgGCACCUGuuaGGCGCCGGcgCCgacaGGUUCu -3' miRNA: 3'- -GCG-UGUGGGC---CUGCGGCCa-GG----CCAAG- -5' |
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13248 | 5' | -61.1 | NC_003401.1 | + | 112128 | 0.66 | 0.702019 |
Target: 5'- cCGU--GCCUGGAUGCCGGUCgCGuGg-- -3' miRNA: 3'- -GCGugUGGGCCUGCGGCCAG-GC-Caag -5' |
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13248 | 5' | -61.1 | NC_003401.1 | + | 123377 | 0.73 | 0.317284 |
Target: 5'- uGCACAgCUCGGgcggcACGCCGGUCCaGUUg -3' miRNA: 3'- gCGUGU-GGGCC-----UGCGGCCAGGcCAAg -5' |
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13248 | 5' | -61.1 | NC_003401.1 | + | 50190 | 0.73 | 0.317284 |
Target: 5'- aCGCGagcCCCGGACGgCGG-CCGaGUUCg -3' miRNA: 3'- -GCGUgu-GGGCCUGCgGCCaGGC-CAAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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