miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13249 5' -50 NC_003401.1 + 71967 0.66 0.99465
Target:  5'- gGGGGCGCGCGuUccagggugucccaccUGACUGUgaCUCgCGCGg -3'
miRNA:   3'- -CCUUGCGUGC-A---------------AUUGACGa-GAG-GUGC- -5'
13249 5' -50 NC_003401.1 + 8648 0.66 0.994317
Target:  5'- aGGAAUaccccCACGU--GCUGggCUCCGCGg -3'
miRNA:   3'- -CCUUGc----GUGCAauUGACgaGAGGUGC- -5'
13249 5' -50 NC_003401.1 + 14484 0.67 0.992394
Target:  5'- uGGAcCGUuCGUUGGCgagcaGCacgUCUCCGCGa -3'
miRNA:   3'- -CCUuGCGuGCAAUUGa----CG---AGAGGUGC- -5'
13249 5' -50 NC_003401.1 + 57405 0.67 0.988577
Target:  5'- cGGAcacACGUACGUUAACguugGCg--CUACGc -3'
miRNA:   3'- -CCU---UGCGUGCAAUUGa---CGagaGGUGC- -5'
13249 5' -50 NC_003401.1 + 74848 0.67 0.988577
Target:  5'- uGAACGCaagcaacgGCGUccuucuuCUGCgugCUCCACGa -3'
miRNA:   3'- cCUUGCG--------UGCAauu----GACGa--GAGGUGC- -5'
13249 5' -50 NC_003401.1 + 40154 0.68 0.985302
Target:  5'- cGGAGagaaccgacaGCACGU--ACUGCUUUCCcuugACGg -3'
miRNA:   3'- -CCUUg---------CGUGCAauUGACGAGAGG----UGC- -5'
13249 5' -50 NC_003401.1 + 101134 0.68 0.983417
Target:  5'- cGGAugGCGCGUUucuagaacaGAUcGCUCgagaCGCGg -3'
miRNA:   3'- -CCUugCGUGCAA---------UUGaCGAGag--GUGC- -5'
13249 5' -50 NC_003401.1 + 94620 0.68 0.98092
Target:  5'- -aAAUGCACGcauugacaaugaUAACUGCggcCUCCACGg -3'
miRNA:   3'- ccUUGCGUGCa-----------AUUGACGa--GAGGUGC- -5'
13249 5' -50 NC_003401.1 + 121173 0.69 0.976662
Target:  5'- gGGGGCGCGcCGguuGCUGCUg-CCGCu -3'
miRNA:   3'- -CCUUGCGU-GCaauUGACGAgaGGUGc -5'
13249 5' -50 NC_003401.1 + 69591 0.69 0.971155
Target:  5'- ---cCGCAUGgcGGCcgGCUCUCCGCc -3'
miRNA:   3'- ccuuGCGUGCaaUUGa-CGAGAGGUGc -5'
13249 5' -50 NC_003401.1 + 114025 0.69 0.969335
Target:  5'- -cGACGC-CGUUGACggagaugaaugaugGUUCUCCAUGa -3'
miRNA:   3'- ccUUGCGuGCAAUUGa-------------CGAGAGGUGC- -5'
13249 5' -50 NC_003401.1 + 18819 0.69 0.96711
Target:  5'- cGAGCGCGCGgaucgcgagcugguGCUGCggguucacgCUCCGCa -3'
miRNA:   3'- cCUUGCGUGCaau-----------UGACGa--------GAGGUGc -5'
13249 5' -50 NC_003401.1 + 16951 0.69 0.964773
Target:  5'- cGGugGagaACGUUAACUGCUCgaugggCACGa -3'
miRNA:   3'- cCUugCg--UGCAAUUGACGAGag----GUGC- -5'
13249 5' -50 NC_003401.1 + 114190 0.72 0.885288
Target:  5'- gGGAACGCGCGcUGACcGCcCUCCcCa -3'
miRNA:   3'- -CCUUGCGUGCaAUUGaCGaGAGGuGc -5'
13249 5' -50 NC_003401.1 + 28274 0.75 0.7735
Target:  5'- uGGuuGCGCAUGUUaucgaGACUGCUCUgCACc -3'
miRNA:   3'- -CCu-UGCGUGCAA-----UUGACGAGAgGUGc -5'
13249 5' -50 NC_003401.1 + 113119 0.79 0.575027
Target:  5'- -cGGCGCACGUcGAUUGCUCUCUAgGg -3'
miRNA:   3'- ccUUGCGUGCAaUUGACGAGAGGUgC- -5'
13249 5' -50 NC_003401.1 + 112999 1.12 0.006333
Target:  5'- gGGAACGCACGUUAACUGCUCUCCACGa -3'
miRNA:   3'- -CCUUGCGUGCAAUUGACGAGAGGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.