Results 21 - 40 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13252 | 3' | -51.4 | NC_003401.1 | + | 112427 | 0.68 | 0.961582 |
Target: 5'- -uGGCGGAAUCUucgccGAGCGCGUuuGc -3' miRNA: 3'- cuCUGCCUUAGGuuu--CUUGUGCGggC- -5' |
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13252 | 3' | -51.4 | NC_003401.1 | + | 43093 | 0.68 | 0.961582 |
Target: 5'- cGGGAUGGAGUggUCAAAGAGCaaACGuUCCGc -3' miRNA: 3'- -CUCUGCCUUA--GGUUUCUUG--UGC-GGGC- -5' |
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13252 | 3' | -51.4 | NC_003401.1 | + | 32515 | 0.68 | 0.96508 |
Target: 5'- cGAGaacGCGGAcaCCuuGGGACGCGCgCCa -3' miRNA: 3'- -CUC---UGCCUuaGGuuUCUUGUGCG-GGc -5' |
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13252 | 3' | -51.4 | NC_003401.1 | + | 17678 | 0.67 | 0.968347 |
Target: 5'- cGAGA-GGAGUCCAGcacgaacccggGGGccACGCGCgCCGc -3' miRNA: 3'- -CUCUgCCUUAGGUU-----------UCU--UGUGCG-GGC- -5' |
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13252 | 3' | -51.4 | NC_003401.1 | + | 15316 | 0.67 | 0.978312 |
Target: 5'- -cGACGGAAacUCCAAaacgucgguguccgGGAuggggucGCACGuCCCGa -3' miRNA: 3'- cuCUGCCUU--AGGUU--------------UCU-------UGUGC-GGGC- -5' |
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13252 | 3' | -51.4 | NC_003401.1 | + | 122140 | 0.67 | 0.979256 |
Target: 5'- -cGGCGGca-CUAGAGAACAgGCCgGg -3' miRNA: 3'- cuCUGCCuuaGGUUUCUUGUgCGGgC- -5' |
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13252 | 3' | -51.4 | NC_003401.1 | + | 43748 | 0.67 | 0.979256 |
Target: 5'- --cGCGGAAUCCcuAGAGCACagguucCCCa -3' miRNA: 3'- cucUGCCUUAGGuuUCUUGUGc-----GGGc -5' |
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13252 | 3' | -51.4 | NC_003401.1 | + | 87535 | 0.66 | 0.983523 |
Target: 5'- cGAGGCcguGGAGUCUAAGcGAUAC-CCCGg -3' miRNA: 3'- -CUCUG---CCUUAGGUUUcUUGUGcGGGC- -5' |
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13252 | 3' | -51.4 | NC_003401.1 | + | 20911 | 0.66 | 0.983523 |
Target: 5'- aGAGAUGGAGauggCCGuuuGAGCACaccCCCGu -3' miRNA: 3'- -CUCUGCCUUa---GGUuu-CUUGUGc--GGGC- -5' |
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13252 | 3' | -51.4 | NC_003401.1 | + | 30480 | 0.68 | 0.961582 |
Target: 5'- uGGGugGGAGauuuUCCAAGGuagaaGACcCGUCCGg -3' miRNA: 3'- -CUCugCCUU----AGGUUUC-----UUGuGCGGGC- -5' |
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13252 | 3' | -51.4 | NC_003401.1 | + | 119668 | 0.68 | 0.953876 |
Target: 5'- cGGcCGGcGUCCGAc-GAUACGCCCGa -3' miRNA: 3'- cUCuGCCuUAGGUUucUUGUGCGGGC- -5' |
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13252 | 3' | -51.4 | NC_003401.1 | + | 32710 | 0.69 | 0.940468 |
Target: 5'- -cGACGaGggUCCcGAGAuugcaccccUACGCCCGg -3' miRNA: 3'- cuCUGC-CuuAGGuUUCUu--------GUGCGGGC- -5' |
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13252 | 3' | -51.4 | NC_003401.1 | + | 79951 | 0.73 | 0.775769 |
Target: 5'- gGGGGCGcGGuugcguugcCCGGGGAACACGCCCu -3' miRNA: 3'- -CUCUGC-CUua-------GGUUUCUUGUGCGGGc -5' |
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13252 | 3' | -51.4 | NC_003401.1 | + | 132481 | 0.73 | 0.789176 |
Target: 5'- cGGGGCGGAGggCC-GGGAGCcgggggaggccggcgGCGCCCGg -3' miRNA: 3'- -CUCUGCCUUa-GGuUUCUUG---------------UGCGGGC- -5' |
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13252 | 3' | -51.4 | NC_003401.1 | + | 49941 | 0.72 | 0.822217 |
Target: 5'- gGAGGCuuuGGggU-CAAAGAGCAgGCCCa -3' miRNA: 3'- -CUCUG---CCuuAgGUUUCUUGUgCGGGc -5' |
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13252 | 3' | -51.4 | NC_003401.1 | + | 15868 | 0.71 | 0.864033 |
Target: 5'- gGAGaacacGCGGAgcuguuggccGUCCGucAGGACGCGCCUGg -3' miRNA: 3'- -CUC-----UGCCU----------UAGGUu-UCUUGUGCGGGC- -5' |
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13252 | 3' | -51.4 | NC_003401.1 | + | 72545 | 0.71 | 0.877014 |
Target: 5'- aGAGGCGGAAUCgcugccagcgcggaCGGGGcgcucaggaggaGGCGCGCCCa -3' miRNA: 3'- -CUCUGCCUUAG--------------GUUUC------------UUGUGCGGGc -5' |
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13252 | 3' | -51.4 | NC_003401.1 | + | 48457 | 0.71 | 0.886485 |
Target: 5'- aGGGCGGAAUCCAAGccuuACACGaCuuGg -3' miRNA: 3'- cUCUGCCUUAGGUUUcu--UGUGC-GggC- -5' |
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13252 | 3' | -51.4 | NC_003401.1 | + | 53349 | 0.7 | 0.919025 |
Target: 5'- uGGGCGG-AUUCGGAGGAaGCGUCCGc -3' miRNA: 3'- cUCUGCCuUAGGUUUCUUgUGCGGGC- -5' |
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13252 | 3' | -51.4 | NC_003401.1 | + | 18163 | 0.69 | 0.930261 |
Target: 5'- aGGACGG-GUCC---GGACugGCCCa -3' miRNA: 3'- cUCUGCCuUAGGuuuCUUGugCGGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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