miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13252 3' -51.4 NC_003401.1 + 113382 1.1 0.006013
Target:  5'- cGAGACGGAAUCCAAAGAACACGCCCGa -3'
miRNA:   3'- -CUCUGCCUUAGGUUUCUUGUGCGGGC- -5'
13252 3' -51.4 NC_003401.1 + 82905 0.67 0.979023
Target:  5'- cGGAuaUGGAGUCgAAAGGuuguccuuaguugACACGUCCGa -3'
miRNA:   3'- cUCU--GCCUUAGgUUUCU-------------UGUGCGGGC- -5'
13252 3' -51.4 NC_003401.1 + 62190 0.66 0.981482
Target:  5'- --cACGGAAUCCAcuGAACGuuCGaCCCa -3'
miRNA:   3'- cucUGCCUUAGGUuuCUUGU--GC-GGGc -5'
13252 3' -51.4 NC_003401.1 + 121156 0.66 0.981482
Target:  5'- cGGGcGCGGGGggCgCGGGGGGCGCGCCgGu -3'
miRNA:   3'- -CUC-UGCCUUa-G-GUUUCUUGUGCGGgC- -5'
13252 3' -51.4 NC_003401.1 + 23574 0.66 0.983523
Target:  5'- aGAGcACGGGuUUCGGuAGuGACGCGCCUGg -3'
miRNA:   3'- -CUC-UGCCUuAGGUU-UC-UUGUGCGGGC- -5'
13252 3' -51.4 NC_003401.1 + 49257 0.66 0.987091
Target:  5'- --cACGGAAUCUgucgccauAAGGGACGUGCCUGg -3'
miRNA:   3'- cucUGCCUUAGG--------UUUCUUGUGCGGGC- -5'
13252 3' -51.4 NC_003401.1 + 123082 0.66 0.987091
Target:  5'- gGAGugGGAAagCugucGGGAAC-CGCCUGc -3'
miRNA:   3'- -CUCugCCUUagGu---UUCUUGuGCGGGC- -5'
13252 3' -51.4 NC_003401.1 + 89027 0.66 0.988487
Target:  5'- --uGCGGucuacaaAAUCCAccGAGC-CGCCCGa -3'
miRNA:   3'- cucUGCC-------UUAGGUuuCUUGuGCGGGC- -5'
13252 3' -51.4 NC_003401.1 + 15021 0.66 0.988635
Target:  5'- aGAGGCGGGAuuUCCGugcgcCACGCgCGa -3'
miRNA:   3'- -CUCUGCCUU--AGGUuucuuGUGCGgGC- -5'
13252 3' -51.4 NC_003401.1 + 85644 0.67 0.974219
Target:  5'- cGGACGGuc-CCgAAAGGGCgugaagcauuccGCGCCCGa -3'
miRNA:   3'- cUCUGCCuuaGG-UUUCUUG------------UGCGGGC- -5'
13252 3' -51.4 NC_003401.1 + 28201 0.67 0.974219
Target:  5'- -cGGCGGuAUCCAcgauGGAUACGCCg- -3'
miRNA:   3'- cuCUGCCuUAGGUuu--CUUGUGCGGgc -5'
13252 3' -51.4 NC_003401.1 + 107743 0.68 0.96508
Target:  5'- cGGGGCGGccgagCCGGAcccGGACaaaACGCCCGa -3'
miRNA:   3'- -CUCUGCCuua--GGUUU---CUUG---UGCGGGC- -5'
13252 3' -51.4 NC_003401.1 + 126078 0.81 0.384335
Target:  5'- uGGGGCuGGAuUUCGAAGAugACGCCCGg -3'
miRNA:   3'- -CUCUG-CCUuAGGUUUCUugUGCGGGC- -5'
13252 3' -51.4 NC_003401.1 + 125051 0.71 0.88577
Target:  5'- -cGGCGGggUcgaCCAGggaggccAGGugGCGCCCGu -3'
miRNA:   3'- cuCUGCCuuA---GGUU-------UCUugUGCGGGC- -5'
13252 3' -51.4 NC_003401.1 + 112951 0.7 0.893492
Target:  5'- cGGAUGGGAUCCcuAGAGAGCaaucgacguGCGCCgGu -3'
miRNA:   3'- cUCUGCCUUAGG--UUUCUUG---------UGCGGgC- -5'
13252 3' -51.4 NC_003401.1 + 119455 0.69 0.935492
Target:  5'- cGGGAgGGGAauaccggguucUCCAguugAGGGGCACaGCCCGu -3'
miRNA:   3'- -CUCUgCCUU-----------AGGU----UUCUUGUG-CGGGC- -5'
13252 3' -51.4 NC_003401.1 + 132267 0.68 0.953876
Target:  5'- cGGGGCGaGggUCCccc--GCGCGCCCc -3'
miRNA:   3'- -CUCUGC-CuuAGGuuucuUGUGCGGGc -5'
13252 3' -51.4 NC_003401.1 + 64527 0.68 0.95785
Target:  5'- uGGGCGGuagCCAGGGGagacggaugGCGCGCCUu -3'
miRNA:   3'- cUCUGCCuuaGGUUUCU---------UGUGCGGGc -5'
13252 3' -51.4 NC_003401.1 + 32478 0.68 0.961582
Target:  5'- --uGCGGAAauaCCGGAGcguacuacuACACGCCCGg -3'
miRNA:   3'- cucUGCCUUa--GGUUUCu--------UGUGCGGGC- -5'
13252 3' -51.4 NC_003401.1 + 71807 0.68 0.96508
Target:  5'- aGGugGGAcaCCcuGGAacGCGCGCCCc -3'
miRNA:   3'- cUCugCCUuaGGuuUCU--UGUGCGGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.