miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13252 3' -51.4 NC_003401.1 + 15021 0.66 0.988635
Target:  5'- aGAGGCGGGAuuUCCGugcgcCACGCgCGa -3'
miRNA:   3'- -CUCUGCCUU--AGGUuucuuGUGCGgGC- -5'
13252 3' -51.4 NC_003401.1 + 15316 0.67 0.978312
Target:  5'- -cGACGGAAacUCCAAaacgucgguguccgGGAuggggucGCACGuCCCGa -3'
miRNA:   3'- cuCUGCCUU--AGGUU--------------UCU-------UGUGC-GGGC- -5'
13252 3' -51.4 NC_003401.1 + 15868 0.71 0.864033
Target:  5'- gGAGaacacGCGGAgcuguuggccGUCCGucAGGACGCGCCUGg -3'
miRNA:   3'- -CUC-----UGCCU----------UAGGUu-UCUUGUGCGGGC- -5'
13252 3' -51.4 NC_003401.1 + 17678 0.67 0.968347
Target:  5'- cGAGA-GGAGUCCAGcacgaacccggGGGccACGCGCgCCGc -3'
miRNA:   3'- -CUCUgCCUUAGGUU-----------UCU--UGUGCG-GGC- -5'
13252 3' -51.4 NC_003401.1 + 18163 0.69 0.930261
Target:  5'- aGGACGG-GUCC---GGACugGCCCa -3'
miRNA:   3'- cUCUGCCuUAGGuuuCUUGugCGGGc -5'
13252 3' -51.4 NC_003401.1 + 20911 0.66 0.983523
Target:  5'- aGAGAUGGAGauggCCGuuuGAGCACaccCCCGu -3'
miRNA:   3'- -CUCUGCCUUa---GGUuu-CUUGUGc--GGGC- -5'
13252 3' -51.4 NC_003401.1 + 21405 0.66 0.98539
Target:  5'- uGGGGCGGAGUacaGGGGGGCcgACGCCa- -3'
miRNA:   3'- -CUCUGCCUUAgg-UUUCUUG--UGCGGgc -5'
13252 3' -51.4 NC_003401.1 + 23574 0.66 0.983523
Target:  5'- aGAGcACGGGuUUCGGuAGuGACGCGCCUGg -3'
miRNA:   3'- -CUC-UGCCUuAGGUU-UC-UUGUGCGGGC- -5'
13252 3' -51.4 NC_003401.1 + 28201 0.67 0.974219
Target:  5'- -cGGCGGuAUCCAcgauGGAUACGCCg- -3'
miRNA:   3'- cuCUGCCuUAGGUuu--CUUGUGCGGgc -5'
13252 3' -51.4 NC_003401.1 + 30480 0.68 0.961582
Target:  5'- uGGGugGGAGauuuUCCAAGGuagaaGACcCGUCCGg -3'
miRNA:   3'- -CUCugCCUU----AGGUUUC-----UUGuGCGGGC- -5'
13252 3' -51.4 NC_003401.1 + 32478 0.68 0.961582
Target:  5'- --uGCGGAAauaCCGGAGcguacuacuACACGCCCGg -3'
miRNA:   3'- cucUGCCUUa--GGUUUCu--------UGUGCGGGC- -5'
13252 3' -51.4 NC_003401.1 + 32515 0.68 0.96508
Target:  5'- cGAGaacGCGGAcaCCuuGGGACGCGCgCCa -3'
miRNA:   3'- -CUC---UGCCUuaGGuuUCUUGUGCG-GGc -5'
13252 3' -51.4 NC_003401.1 + 32710 0.69 0.940468
Target:  5'- -cGACGaGggUCCcGAGAuugcaccccUACGCCCGg -3'
miRNA:   3'- cuCUGC-CuuAGGuUUCUu--------GUGCGGGC- -5'
13252 3' -51.4 NC_003401.1 + 43093 0.68 0.961582
Target:  5'- cGGGAUGGAGUggUCAAAGAGCaaACGuUCCGc -3'
miRNA:   3'- -CUCUGCCUUA--GGUUUCUUG--UGC-GGGC- -5'
13252 3' -51.4 NC_003401.1 + 43748 0.67 0.979256
Target:  5'- --cGCGGAAUCCcuAGAGCACagguucCCCa -3'
miRNA:   3'- cucUGCCUUAGGuuUCUUGUGc-----GGGc -5'
13252 3' -51.4 NC_003401.1 + 48457 0.71 0.886485
Target:  5'- aGGGCGGAAUCCAAGccuuACACGaCuuGg -3'
miRNA:   3'- cUCUGCCUUAGGUUUcu--UGUGC-GggC- -5'
13252 3' -51.4 NC_003401.1 + 49257 0.66 0.987091
Target:  5'- --cACGGAAUCUgucgccauAAGGGACGUGCCUGg -3'
miRNA:   3'- cucUGCCUUAGG--------UUUCUUGUGCGGGC- -5'
13252 3' -51.4 NC_003401.1 + 49941 0.72 0.822217
Target:  5'- gGAGGCuuuGGggU-CAAAGAGCAgGCCCa -3'
miRNA:   3'- -CUCUG---CCuuAgGUUUCUUGUgCGGGc -5'
13252 3' -51.4 NC_003401.1 + 53349 0.7 0.919025
Target:  5'- uGGGCGG-AUUCGGAGGAaGCGUCCGc -3'
miRNA:   3'- cUCUGCCuUAGGUUUCUUgUGCGGGC- -5'
13252 3' -51.4 NC_003401.1 + 62190 0.66 0.981482
Target:  5'- --cACGGAAUCCAcuGAACGuuCGaCCCa -3'
miRNA:   3'- cucUGCCUUAGGUuuCUUGU--GC-GGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.