miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13252 3' -51.4 NC_003401.1 + 113382 1.1 0.006013
Target:  5'- cGAGACGGAAUCCAAAGAACACGCCCGa -3'
miRNA:   3'- -CUCUGCCUUAGGUUUCUUGUGCGGGC- -5'
13252 3' -51.4 NC_003401.1 + 126078 0.81 0.384335
Target:  5'- uGGGGCuGGAuUUCGAAGAugACGCCCGg -3'
miRNA:   3'- -CUCUG-CCUuAGGUUUCUugUGCGGGC- -5'
13252 3' -51.4 NC_003401.1 + 123529 0.76 0.610194
Target:  5'- --cACGGggUCCAGGGGcCGCGCCgCGg -3'
miRNA:   3'- cucUGCCuuAGGUUUCUuGUGCGG-GC- -5'
13252 3' -51.4 NC_003401.1 + 79951 0.73 0.775769
Target:  5'- gGGGGCGcGGuugcguugcCCGGGGAACACGCCCu -3'
miRNA:   3'- -CUCUGC-CUua-------GGUUUCUUGUGCGGGc -5'
13252 3' -51.4 NC_003401.1 + 132481 0.73 0.789176
Target:  5'- cGGGGCGGAGggCC-GGGAGCcgggggaggccggcgGCGCCCGg -3'
miRNA:   3'- -CUCUGCCUUa-GGuUUCUUG---------------UGCGGGC- -5'
13252 3' -51.4 NC_003401.1 + 49941 0.72 0.822217
Target:  5'- gGAGGCuuuGGggU-CAAAGAGCAgGCCCa -3'
miRNA:   3'- -CUCUG---CCuuAgGUUUCUUGUgCGGGc -5'
13252 3' -51.4 NC_003401.1 + 15868 0.71 0.864033
Target:  5'- gGAGaacacGCGGAgcuguuggccGUCCGucAGGACGCGCCUGg -3'
miRNA:   3'- -CUC-----UGCCU----------UAGGUu-UCUUGUGCGGGC- -5'
13252 3' -51.4 NC_003401.1 + 72545 0.71 0.877014
Target:  5'- aGAGGCGGAAUCgcugccagcgcggaCGGGGcgcucaggaggaGGCGCGCCCa -3'
miRNA:   3'- -CUCUGCCUUAG--------------GUUUC------------UUGUGCGGGc -5'
13252 3' -51.4 NC_003401.1 + 125051 0.71 0.88577
Target:  5'- -cGGCGGggUcgaCCAGggaggccAGGugGCGCCCGu -3'
miRNA:   3'- cuCUGCCuuA---GGUU-------UCUugUGCGGGC- -5'
13252 3' -51.4 NC_003401.1 + 48457 0.71 0.886485
Target:  5'- aGGGCGGAAUCCAAGccuuACACGaCuuGg -3'
miRNA:   3'- cUCUGCCUUAGGUUUcu--UGUGC-GggC- -5'
13252 3' -51.4 NC_003401.1 + 112951 0.7 0.893492
Target:  5'- cGGAUGGGAUCCcuAGAGAGCaaucgacguGCGCCgGu -3'
miRNA:   3'- cUCUGCCUUAGG--UUUCUUG---------UGCGGgC- -5'
13252 3' -51.4 NC_003401.1 + 53349 0.7 0.919025
Target:  5'- uGGGCGG-AUUCGGAGGAaGCGUCCGc -3'
miRNA:   3'- cUCUGCCuUAGGUUUCUUgUGCGGGC- -5'
13252 3' -51.4 NC_003401.1 + 18163 0.69 0.930261
Target:  5'- aGGACGG-GUCC---GGACugGCCCa -3'
miRNA:   3'- cUCUGCCuUAGGuuuCUUGugCGGGc -5'
13252 3' -51.4 NC_003401.1 + 119455 0.69 0.935492
Target:  5'- cGGGAgGGGAauaccggguucUCCAguugAGGGGCACaGCCCGu -3'
miRNA:   3'- -CUCUgCCUU-----------AGGU----UUCUUGUG-CGGGC- -5'
13252 3' -51.4 NC_003401.1 + 32710 0.69 0.940468
Target:  5'- -cGACGaGggUCCcGAGAuugcaccccUACGCCCGg -3'
miRNA:   3'- cuCUGC-CuuAGGuUUCUu--------GUGCGGGC- -5'
13252 3' -51.4 NC_003401.1 + 132267 0.68 0.953876
Target:  5'- cGGGGCGaGggUCCccc--GCGCGCCCc -3'
miRNA:   3'- -CUCUGC-CuuAGGuuucuUGUGCGGGc -5'
13252 3' -51.4 NC_003401.1 + 119668 0.68 0.953876
Target:  5'- cGGcCGGcGUCCGAc-GAUACGCCCGa -3'
miRNA:   3'- cUCuGCCuUAGGUUucUUGUGCGGGC- -5'
13252 3' -51.4 NC_003401.1 + 64527 0.68 0.95785
Target:  5'- uGGGCGGuagCCAGGGGagacggaugGCGCGCCUu -3'
miRNA:   3'- cUCUGCCuuaGGUUUCU---------UGUGCGGGc -5'
13252 3' -51.4 NC_003401.1 + 30480 0.68 0.961582
Target:  5'- uGGGugGGAGauuuUCCAAGGuagaaGACcCGUCCGg -3'
miRNA:   3'- -CUCugCCUU----AGGUUUC-----UUGuGCGGGC- -5'
13252 3' -51.4 NC_003401.1 + 32478 0.68 0.961582
Target:  5'- --uGCGGAAauaCCGGAGcguacuacuACACGCCCGg -3'
miRNA:   3'- cucUGCCUUa--GGUUUCu--------UGUGCGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.