Results 21 - 40 of 105 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13260 | 3' | -54.2 | NC_003401.1 | + | 26015 | 0.66 | 0.931145 |
Target: 5'- gGGA--CCCUcggggaacgggGAGCCCGGGACCCuCg- -3' miRNA: 3'- -CCUaaGGGG-----------UUUGGGCUCUGGGuGac -5' |
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13260 | 3' | -54.2 | NC_003401.1 | + | 26032 | 0.66 | 0.936219 |
Target: 5'- cGGGcUCCCCGuucCCCGAGGguCCCGg-- -3' miRNA: 3'- -CCUaAGGGGUuu-GGGCUCU--GGGUgac -5' |
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13260 | 3' | -54.2 | NC_003401.1 | + | 26065 | 0.66 | 0.931145 |
Target: 5'- gGGA--CCCUcggggaacgggGAGCCCGGGACCCuCg- -3' miRNA: 3'- -CCUaaGGGG-----------UUUGGGCUCUGGGuGac -5' |
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13260 | 3' | -54.2 | NC_003401.1 | + | 26082 | 0.66 | 0.936219 |
Target: 5'- cGGGcUCCCCGuucCCCGAGGguCCCGg-- -3' miRNA: 3'- -CCUaAGGGGUuu-GGGCUCU--GGGUgac -5' |
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13260 | 3' | -54.2 | NC_003401.1 | + | 26115 | 0.66 | 0.931145 |
Target: 5'- gGGA--CCCUcggggaacgggGAGCCCGGGACCCuCg- -3' miRNA: 3'- -CCUaaGGGG-----------UUUGGGCUCUGGGuGac -5' |
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13260 | 3' | -54.2 | NC_003401.1 | + | 26132 | 0.66 | 0.936219 |
Target: 5'- cGGGcUCCCCGuucCCCGAGGguCCCGg-- -3' miRNA: 3'- -CCUaAGGGGUuu-GGGCUCU--GGGUgac -5' |
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13260 | 3' | -54.2 | NC_003401.1 | + | 26165 | 0.66 | 0.931145 |
Target: 5'- gGGA--CCCUcggggaacgggGAGCCCGGGACCCuCg- -3' miRNA: 3'- -CCUaaGGGG-----------UUUGGGCUCUGGGuGac -5' |
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13260 | 3' | -54.2 | NC_003401.1 | + | 26182 | 0.66 | 0.936219 |
Target: 5'- cGGGcUCCCCGuucCCCGAGGguCCCGg-- -3' miRNA: 3'- -CCUaAGGGGUuu-GGGCUCU--GGGUgac -5' |
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13260 | 3' | -54.2 | NC_003401.1 | + | 26215 | 0.66 | 0.931145 |
Target: 5'- gGGA--CCCUcggggaacgggGAGCCCGGGACCCuCg- -3' miRNA: 3'- -CCUaaGGGG-----------UUUGGGCUCUGGGuGac -5' |
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13260 | 3' | -54.2 | NC_003401.1 | + | 26232 | 0.66 | 0.936219 |
Target: 5'- cGGGcUCCCCGuucCCCGAGGguCCCGg-- -3' miRNA: 3'- -CCUaAGGGGUuu-GGGCUCU--GGGUgac -5' |
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13260 | 3' | -54.2 | NC_003401.1 | + | 26265 | 0.66 | 0.931145 |
Target: 5'- gGGA--CCCUcggggaacgggGAGCCCGGGACCCuCg- -3' miRNA: 3'- -CCUaaGGGG-----------UUUGGGCUCUGGGuGac -5' |
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13260 | 3' | -54.2 | NC_003401.1 | + | 26282 | 0.66 | 0.936219 |
Target: 5'- cGGGcUCCCCGuucCCCGAGGguCCCGg-- -3' miRNA: 3'- -CCUaAGGGGUuu-GGGCUCU--GGGUgac -5' |
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13260 | 3' | -54.2 | NC_003401.1 | + | 26315 | 0.66 | 0.931145 |
Target: 5'- gGGA--CCCUcggggaacgggGAGCCCGGGACCCuCg- -3' miRNA: 3'- -CCUaaGGGG-----------UUUGGGCUCUGGGuGac -5' |
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13260 | 3' | -54.2 | NC_003401.1 | + | 26332 | 0.66 | 0.936219 |
Target: 5'- cGGGcUCCCCGuucCCCGAGGguCCCGg-- -3' miRNA: 3'- -CCUaAGGGGUuu-GGGCUCU--GGGUgac -5' |
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13260 | 3' | -54.2 | NC_003401.1 | + | 26365 | 0.66 | 0.931145 |
Target: 5'- gGGA--CCCUcggggaacgggGAGCCCGGGACCCuCg- -3' miRNA: 3'- -CCUaaGGGG-----------UUUGGGCUCUGGGuGac -5' |
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13260 | 3' | -54.2 | NC_003401.1 | + | 26382 | 0.66 | 0.936219 |
Target: 5'- cGGGcUCCCCGuucCCCGAGGguCCCGg-- -3' miRNA: 3'- -CCUaAGGGGUuu-GGGCUCU--GGGUgac -5' |
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13260 | 3' | -54.2 | NC_003401.1 | + | 26415 | 0.66 | 0.931145 |
Target: 5'- gGGA--CCCUcggggaacgggGAGCCCGGGACCCuCg- -3' miRNA: 3'- -CCUaaGGGG-----------UUUGGGCUCUGGGuGac -5' |
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13260 | 3' | -54.2 | NC_003401.1 | + | 26432 | 0.66 | 0.936219 |
Target: 5'- cGGGcUCCCCGuucCCCGAGGguCCCGg-- -3' miRNA: 3'- -CCUaAGGGGUuu-GGGCUCU--GGGUgac -5' |
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13260 | 3' | -54.2 | NC_003401.1 | + | 26457 | 0.66 | 0.949979 |
Target: 5'- nGGGcUCCCCGuucCCCGAGGguCCCGg-- -3' miRNA: 3'- -CCUaAGGGGUuu-GGGCUCU--GGGUgac -5' |
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13260 | 3' | -54.2 | NC_003401.1 | + | 26465 | 0.66 | 0.931145 |
Target: 5'- gGGA--CCCUcggggaacgggGAGCCCGGGACCCuCg- -3' miRNA: 3'- -CCUaaGGGG-----------UUUGGGCUCUGGGuGac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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