miRNA display CGI


Results 1 - 20 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13260 3' -54.2 NC_003401.1 + 6714 0.66 0.931145
Target:  5'- ---aUCgCCCAGGCCCuGAGACUCAa-- -3'
miRNA:   3'- ccuaAG-GGGUUUGGG-CUCUGGGUgac -5'
13260 3' -54.2 NC_003401.1 + 17674 0.73 0.631035
Target:  5'- aGGAgUCCagcaCGAACCCGGGGgCCACg- -3'
miRNA:   3'- -CCUaAGGg---GUUUGGGCUCUgGGUGac -5'
13260 3' -54.2 NC_003401.1 + 23168 0.67 0.925826
Target:  5'- ----cCCCCAGACgCgCGGGGCCCAaaGg -3'
miRNA:   3'- ccuaaGGGGUUUG-G-GCUCUGGGUgaC- -5'
13260 3' -54.2 NC_003401.1 + 25490 0.71 0.753071
Target:  5'- uGGGUUCCCCGAGgguCCCGGGcucCCCGu-- -3'
miRNA:   3'- -CCUAAGGGGUUU---GGGCUCu--GGGUgac -5'
13260 3' -54.2 NC_003401.1 + 25533 0.66 0.936219
Target:  5'- cGGGcUCCCCGuucCCCGAGGguCCCGg-- -3'
miRNA:   3'- -CCUaAGGGGUuu-GGGCUCU--GGGUgac -5'
13260 3' -54.2 NC_003401.1 + 25583 0.66 0.936219
Target:  5'- cGGGcUCCCCGuucCCCGAGGguCCCGg-- -3'
miRNA:   3'- -CCUaAGGGGUuu-GGGCUCU--GGGUgac -5'
13260 3' -54.2 NC_003401.1 + 25633 0.66 0.936219
Target:  5'- cGGGcUCCCCGuucCCCGAGGguCCCGg-- -3'
miRNA:   3'- -CCUaAGGGGUuu-GGGCUCU--GGGUgac -5'
13260 3' -54.2 NC_003401.1 + 25666 0.66 0.931145
Target:  5'- gGGA--CCCUcggggaacgggGAGCCCGGGACCCuCg- -3'
miRNA:   3'- -CCUaaGGGG-----------UUUGGGCUCUGGGuGac -5'
13260 3' -54.2 NC_003401.1 + 25683 0.66 0.936219
Target:  5'- cGGGcUCCCCGuucCCCGAGGguCCCGg-- -3'
miRNA:   3'- -CCUaAGGGGUuu-GGGCUCU--GGGUgac -5'
13260 3' -54.2 NC_003401.1 + 25716 0.66 0.931145
Target:  5'- gGGA--CCCUcggggaacgggGAGCCCGGGACCCuCg- -3'
miRNA:   3'- -CCUaaGGGG-----------UUUGGGCUCUGGGuGac -5'
13260 3' -54.2 NC_003401.1 + 25733 0.66 0.936219
Target:  5'- cGGGcUCCCCGuucCCCGAGGguCCCGg-- -3'
miRNA:   3'- -CCUaAGGGGUuu-GGGCUCU--GGGUgac -5'
13260 3' -54.2 NC_003401.1 + 25766 0.66 0.931145
Target:  5'- gGGA--CCCUcggggaacgggGAGCCCGGGACCCuCg- -3'
miRNA:   3'- -CCUaaGGGG-----------UUUGGGCUCUGGGuGac -5'
13260 3' -54.2 NC_003401.1 + 25783 0.66 0.936219
Target:  5'- cGGGcUCCCCGuucCCCGAGGguCCCGg-- -3'
miRNA:   3'- -CCUaAGGGGUuu-GGGCUCU--GGGUgac -5'
13260 3' -54.2 NC_003401.1 + 25816 0.66 0.931145
Target:  5'- gGGA--CCCUcggggaacgggGAGCCCGGGACCCuCg- -3'
miRNA:   3'- -CCUaaGGGG-----------UUUGGGCUCUGGGuGac -5'
13260 3' -54.2 NC_003401.1 + 25833 0.66 0.936219
Target:  5'- cGGGcUCCCCGuucCCCGAGGguCCCGg-- -3'
miRNA:   3'- -CCUaAGGGGUuu-GGGCUCU--GGGUgac -5'
13260 3' -54.2 NC_003401.1 + 25866 0.66 0.931145
Target:  5'- gGGA--CCCUcggggaacgggGAGCCCGGGACCCuCg- -3'
miRNA:   3'- -CCUaaGGGG-----------UUUGGGCUCUGGGuGac -5'
13260 3' -54.2 NC_003401.1 + 25883 0.66 0.936219
Target:  5'- cGGGcUCCCCGuucCCCGAGGguCCCGg-- -3'
miRNA:   3'- -CCUaAGGGGUuu-GGGCUCU--GGGUgac -5'
13260 3' -54.2 NC_003401.1 + 25916 0.66 0.931145
Target:  5'- gGGA--CCCUcggggaacgggGAGCCCGGGACCCuCg- -3'
miRNA:   3'- -CCUaaGGGG-----------UUUGGGCUCUGGGuGac -5'
13260 3' -54.2 NC_003401.1 + 25933 0.7 0.791058
Target:  5'- cGGGcUCCCCGuuCCCGAGGguCCCGg-- -3'
miRNA:   3'- -CCUaAGGGGUuuGGGCUCU--GGGUgac -5'
13260 3' -54.2 NC_003401.1 + 25982 0.66 0.936219
Target:  5'- cGGGcUCCCCGuucCCCGAGGguCCCGg-- -3'
miRNA:   3'- -CCUaAGGGGUuu-GGGCUCU--GGGUgac -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.