miRNA display CGI


Results 1 - 20 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13260 3' -54.2 NC_003401.1 + 25683 0.66 0.936219
Target:  5'- cGGGcUCCCCGuucCCCGAGGguCCCGg-- -3'
miRNA:   3'- -CCUaAGGGGUuu-GGGCUCU--GGGUgac -5'
13260 3' -54.2 NC_003401.1 + 31202 0.68 0.895563
Target:  5'- cGGUUUCCCu-GCCCGGGGaCCGCa- -3'
miRNA:   3'- cCUAAGGGGuuUGGGCUCUgGGUGac -5'
13260 3' -54.2 NC_003401.1 + 105931 0.67 0.9021
Target:  5'- ----cCCCgCAAACCCGuG-CCCAUUGa -3'
miRNA:   3'- ccuaaGGG-GUUUGGGCuCuGGGUGAC- -5'
13260 3' -54.2 NC_003401.1 + 132422 0.67 0.918543
Target:  5'- gGGggUCCCgCGGGgggccggggccgccCCCGGGugCCGCUc -3'
miRNA:   3'- -CCuaAGGG-GUUU--------------GGGCUCugGGUGAc -5'
13260 3' -54.2 NC_003401.1 + 6714 0.66 0.931145
Target:  5'- ---aUCgCCCAGGCCCuGAGACUCAa-- -3'
miRNA:   3'- ccuaAG-GGGUUUGGG-CUCUGGGUgac -5'
13260 3' -54.2 NC_003401.1 + 68502 0.66 0.931145
Target:  5'- gGGGUUCCCggguuaAAACCCGcGGGgCCGCc- -3'
miRNA:   3'- -CCUAAGGGg-----UUUGGGC-UCUgGGUGac -5'
13260 3' -54.2 NC_003401.1 + 25533 0.66 0.936219
Target:  5'- cGGGcUCCCCGuucCCCGAGGguCCCGg-- -3'
miRNA:   3'- -CCUaAGGGGUuu-GGGCUCU--GGGUgac -5'
13260 3' -54.2 NC_003401.1 + 25583 0.66 0.936219
Target:  5'- cGGGcUCCCCGuucCCCGAGGguCCCGg-- -3'
miRNA:   3'- -CCUaAGGGGUuu-GGGCUCU--GGGUgac -5'
13260 3' -54.2 NC_003401.1 + 25633 0.66 0.936219
Target:  5'- cGGGcUCCCCGuucCCCGAGGguCCCGg-- -3'
miRNA:   3'- -CCUaAGGGGUuu-GGGCUCU--GGGUgac -5'
13260 3' -54.2 NC_003401.1 + 125001 0.68 0.895563
Target:  5'- ---gUCCgCAAGCUCGGGcggcacguacGCCCACUGc -3'
miRNA:   3'- ccuaAGGgGUUUGGGCUC----------UGGGUGAC- -5'
13260 3' -54.2 NC_003401.1 + 107652 0.68 0.888791
Target:  5'- cGGGgcCCaUCGAGCCUaucaaugaauGGGGCCCGCUGg -3'
miRNA:   3'- -CCUaaGG-GGUUUGGG----------CUCUGGGUGAC- -5'
13260 3' -54.2 NC_003401.1 + 117937 0.68 0.881786
Target:  5'- -----gCCCAAAUCUGGGGCCCAUg- -3'
miRNA:   3'- ccuaagGGGUUUGGGCUCUGGGUGac -5'
13260 3' -54.2 NC_003401.1 + 118288 0.8 0.27578
Target:  5'- ----cUCCCGAGCCCGGGGCCCGCg- -3'
miRNA:   3'- ccuaaGGGGUUUGGGCUCUGGGUGac -5'
13260 3' -54.2 NC_003401.1 + 132532 0.77 0.432886
Target:  5'- ----cCCCCGGGCCCGGGGcCCCACa- -3'
miRNA:   3'- ccuaaGGGGUUUGGGCUCU-GGGUGac -5'
13260 3' -54.2 NC_003401.1 + 25490 0.71 0.753071
Target:  5'- uGGGUUCCCCGAGgguCCCGGGcucCCCGu-- -3'
miRNA:   3'- -CCUAAGGGGUUU---GGGCUCu--GGGUgac -5'
13260 3' -54.2 NC_003401.1 + 25933 0.7 0.791058
Target:  5'- cGGGcUCCCCGuuCCCGAGGguCCCGg-- -3'
miRNA:   3'- -CCUaAGGGGUuuGGGCUCU--GGGUgac -5'
13260 3' -54.2 NC_003401.1 + 86317 0.69 0.835169
Target:  5'- -uGUUCCCgAAGCaCCGAcACCCGCUc -3'
miRNA:   3'- ccUAAGGGgUUUG-GGCUcUGGGUGAc -5'
13260 3' -54.2 NC_003401.1 + 132343 0.69 0.835169
Target:  5'- ----gCCCCGccGGCCCG-GGCCCGCg- -3'
miRNA:   3'- ccuaaGGGGU--UUGGGCuCUGGGUGac -5'
13260 3' -54.2 NC_003401.1 + 132274 0.69 0.851542
Target:  5'- aGGGUcCCCCGcgcGCCCcccGGGCCCGCg- -3'
miRNA:   3'- -CCUAaGGGGUu--UGGGc--UCUGGGUGac -5'
13260 3' -54.2 NC_003401.1 + 53192 0.68 0.874554
Target:  5'- cGGAcgcUUCCuCCGAAUCCGcccACCCAUUGu -3'
miRNA:   3'- -CCU---AAGG-GGUUUGGGCuc-UGGGUGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.