miRNA display CGI


Results 21 - 38 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13262 5' -56.7 NC_003401.1 + 98994 0.67 0.834928
Target:  5'- gGGCCAgcgagcgucugAUaGGGGcuaggucucuGGCGUCCuCUGCCGc -3'
miRNA:   3'- gCCGGU-----------UA-CCCU----------UUGCAGG-GACGGCc -5'
13262 5' -56.7 NC_003401.1 + 103604 0.72 0.574385
Target:  5'- aGGCCAcgGUGGGAacaaguuuagAACGaCCCgcgGCCGa -3'
miRNA:   3'- gCCGGU--UACCCU----------UUGCaGGGa--CGGCc -5'
13262 5' -56.7 NC_003401.1 + 107268 0.67 0.850989
Target:  5'- cCGGCCGuccguucUGGGGAGCGUgUauugaaUGCgCGGg -3'
miRNA:   3'- -GCCGGUu------ACCCUUUGCAgGg-----ACG-GCC- -5'
13262 5' -56.7 NC_003401.1 + 107724 0.7 0.655467
Target:  5'- aGGCCAccGGGGcaacgcucggGGCGgCCgaGCCGGa -3'
miRNA:   3'- gCCGGUuaCCCU----------UUGCaGGgaCGGCC- -5'
13262 5' -56.7 NC_003401.1 + 107800 0.66 0.880715
Target:  5'- aGGCuCGAUGGGccccGCG-CCCggugGCgCGGa -3'
miRNA:   3'- gCCG-GUUACCCuu--UGCaGGGa---CG-GCC- -5'
13262 5' -56.7 NC_003401.1 + 117655 1.1 0.002182
Target:  5'- cCGGCCAAUGGGAAACGUCCCUGCCGGc -3'
miRNA:   3'- -GCCGGUUACCCUUUGCAGGGACGGCC- -5'
13262 5' -56.7 NC_003401.1 + 117819 0.67 0.826621
Target:  5'- gGGCCGccGGcaGGGACGuuUCCCauugGCCGGc -3'
miRNA:   3'- gCCGGUuaCC--CUUUGC--AGGGa---CGGCC- -5'
13262 5' -56.7 NC_003401.1 + 118557 0.7 0.695811
Target:  5'- gCGGUCAAUGGGu--CGaaCCC-GCCGGc -3'
miRNA:   3'- -GCCGGUUACCCuuuGCa-GGGaCGGCC- -5'
13262 5' -56.7 NC_003401.1 + 120013 0.67 0.843053
Target:  5'- cCGGCCAccGGcGGucugccccCGUCCCUGgUGGc -3'
miRNA:   3'- -GCCGGUuaCC-CUuu------GCAGGGACgGCC- -5'
13262 5' -56.7 NC_003401.1 + 120212 0.71 0.624985
Target:  5'- aCGGCCAGUGGGAAaACGcuagcaUCcgCCUGgUGGg -3'
miRNA:   3'- -GCCGGUUACCCUU-UGC------AG--GGACgGCC- -5'
13262 5' -56.7 NC_003401.1 + 120786 0.66 0.87647
Target:  5'- uGGCCuggaAGUGGGggGCGgaugggugaugucguUCCCa-CCGGc -3'
miRNA:   3'- gCCGG----UUACCCuuUGC---------------AGGGacGGCC- -5'
13262 5' -56.7 NC_003401.1 + 121438 0.66 0.858729
Target:  5'- uGGCgAuUGGG-GugGUCCCggugaGUCGGg -3'
miRNA:   3'- gCCGgUuACCCuUugCAGGGa----CGGCC- -5'
13262 5' -56.7 NC_003401.1 + 132205 0.76 0.371925
Target:  5'- gCGGCCGGgcccGGAGGCG-CCCgGCCGGc -3'
miRNA:   3'- -GCCGGUUac--CCUUUGCaGGGaCGGCC- -5'
13262 5' -56.7 NC_003401.1 + 132407 0.66 0.887614
Target:  5'- uCGGuUCGcgGGGccGGGgGUCCCgcgggggGCCGGg -3'
miRNA:   3'- -GCC-GGUuaCCC--UUUgCAGGGa------CGGCC- -5'
13262 5' -56.7 NC_003401.1 + 132472 0.69 0.735311
Target:  5'- cCGGCCGAcucccGGGAGCGcCCCgGuCCGGc -3'
miRNA:   3'- -GCCGGUUac---CCUUUGCaGGGaC-GGCC- -5'
13262 5' -56.7 NC_003401.1 + 132515 0.71 0.614825
Target:  5'- gCGGCCGG-GGGcgGCGgccgcgggCCCggGCCGGc -3'
miRNA:   3'- -GCCGGUUaCCCuuUGCa-------GGGa-CGGCC- -5'
13262 5' -56.7 NC_003401.1 + 132639 0.68 0.754567
Target:  5'- uCGGCCGGaccGGGgcGC-UCCCgggagucgGCCGGg -3'
miRNA:   3'- -GCCGGUUa--CCCuuUGcAGGGa-------CGGCC- -5'
13262 5' -56.7 NC_003401.1 + 132675 0.69 0.744987
Target:  5'- gGGCCc--GGGggGCGUCggggcgcggcgCC-GCCGGg -3'
miRNA:   3'- gCCGGuuaCCCuuUGCAG-----------GGaCGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.