miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13262 5' -56.7 NC_003401.1 + 10843 0.67 0.843053
Target:  5'- -cGCCuacGGcGAGGCGUCCgaGCUGGu -3'
miRNA:   3'- gcCGGuuaCC-CUUUGCAGGgaCGGCC- -5'
13262 5' -56.7 NC_003401.1 + 14766 0.69 0.735311
Target:  5'- gGGCCugcuggaggauGUGGGuGACGUUaaUGCCGGc -3'
miRNA:   3'- gCCGGu----------UACCCuUUGCAGggACGGCC- -5'
13262 5' -56.7 NC_003401.1 + 23818 0.69 0.725546
Target:  5'- gCGGCguGgGGGAAagcGCGgcgccaCCUGCCGGc -3'
miRNA:   3'- -GCCGguUaCCCUU---UGCag----GGACGGCC- -5'
13262 5' -56.7 NC_003401.1 + 27880 0.71 0.584451
Target:  5'- gCGGUCGuUGGucGGCGUCCUgugcGCCGGa -3'
miRNA:   3'- -GCCGGUuACCcuUUGCAGGGa---CGGCC- -5'
13262 5' -56.7 NC_003401.1 + 39210 0.71 0.635151
Target:  5'- uGGCCGGUGacGggGCGUUCgCUGCCa- -3'
miRNA:   3'- gCCGGUUACc-CuuUGCAGG-GACGGcc -5'
13262 5' -56.7 NC_003401.1 + 47842 0.7 0.675709
Target:  5'- gGGCCGcgGGGAcggucCGUCCggGCCGu -3'
miRNA:   3'- gCCGGUuaCCCUuu---GCAGGgaCGGCc -5'
13262 5' -56.7 NC_003401.1 + 51558 0.69 0.748831
Target:  5'- -cGCCGGUGGGGGucuugaaacugaacCGUCCCcGCCGu -3'
miRNA:   3'- gcCGGUUACCCUUu-------------GCAGGGaCGGCc -5'
13262 5' -56.7 NC_003401.1 + 53348 0.7 0.675709
Target:  5'- gGGCgGAUucgGaGGAAGCGuccgccaacgcUCCCUGCUGGg -3'
miRNA:   3'- gCCGgUUA---C-CCUUUGC-----------AGGGACGGCC- -5'
13262 5' -56.7 NC_003401.1 + 58105 0.66 0.887614
Target:  5'- aGGCgGGUGGGAAgu-UUCCUGUaCGGg -3'
miRNA:   3'- gCCGgUUACCCUUugcAGGGACG-GCC- -5'
13262 5' -56.7 NC_003401.1 + 68888 0.66 0.858729
Target:  5'- uGGCCAAcGGGAagAugGUUCCUGaCa- -3'
miRNA:   3'- gCCGGUUaCCCU--UugCAGGGACgGcc -5'
13262 5' -56.7 NC_003401.1 + 68935 0.7 0.655467
Target:  5'- aCGGCCGAgaaGAGGCG-CCCUGUCGu -3'
miRNA:   3'- -GCCGGUUaccCUUUGCaGGGACGGCc -5'
13262 5' -56.7 NC_003401.1 + 72611 0.71 0.604678
Target:  5'- gGGCaGAUGGaAGACG-CCCUcGCCGGa -3'
miRNA:   3'- gCCGgUUACCcUUUGCaGGGA-CGGCC- -5'
13262 5' -56.7 NC_003401.1 + 75179 0.66 0.858729
Target:  5'- aGGUCAAUGGu--GCGUCaCCUGUUaGGa -3'
miRNA:   3'- gCCGGUUACCcuuUGCAG-GGACGG-CC- -5'
13262 5' -56.7 NC_003401.1 + 79949 0.67 0.81814
Target:  5'- gGGCgCGGUugcguugcccGGGGAACacgCCCUGCCGc -3'
miRNA:   3'- gCCG-GUUA----------CCCUUUGca-GGGACGGCc -5'
13262 5' -56.7 NC_003401.1 + 88224 0.66 0.858729
Target:  5'- uCGGUauAUGGGucACGUuccagccuUCCUGCUGGg -3'
miRNA:   3'- -GCCGguUACCCuuUGCA--------GGGACGGCC- -5'
13262 5' -56.7 NC_003401.1 + 89124 0.67 0.81814
Target:  5'- -aGCUGcUGGGugcCGUCCCUGCCa- -3'
miRNA:   3'- gcCGGUuACCCuuuGCAGGGACGGcc -5'
13262 5' -56.7 NC_003401.1 + 89866 0.69 0.744987
Target:  5'- gCGGCCugcguccAUGGGcuugagccagGGACGcCCCUGCCu- -3'
miRNA:   3'- -GCCGGu------UACCC----------UUUGCaGGGACGGcc -5'
13262 5' -56.7 NC_003401.1 + 91593 0.67 0.817283
Target:  5'- cCGcGCCAugggcacguacacGUcGGAGGCGUCCCUcGCCuGGc -3'
miRNA:   3'- -GC-CGGU-------------UAcCCUUUGCAGGGA-CGG-CC- -5'
13262 5' -56.7 NC_003401.1 + 92305 0.66 0.880715
Target:  5'- aGGCCGGgacgGGGAAucgccUGUUCCUuaCGGu -3'
miRNA:   3'- gCCGGUUa---CCCUUu----GCAGGGAcgGCC- -5'
13262 5' -56.7 NC_003401.1 + 94719 0.67 0.825781
Target:  5'- gCGGCCAggaggaacgaucaAUGGGcauuGGCGUCCaaggacugGCCGa -3'
miRNA:   3'- -GCCGGU-------------UACCCu---UUGCAGGga------CGGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.