miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13262 5' -56.7 NC_003401.1 + 117655 1.1 0.002182
Target:  5'- cCGGCCAAUGGGAAACGUCCCUGCCGGc -3'
miRNA:   3'- -GCCGGUUACCCUUUGCAGGGACGGCC- -5'
13262 5' -56.7 NC_003401.1 + 132407 0.66 0.887614
Target:  5'- uCGGuUCGcgGGGccGGGgGUCCCgcgggggGCCGGg -3'
miRNA:   3'- -GCC-GGUuaCCC--UUUgCAGGGa------CGGCC- -5'
13262 5' -56.7 NC_003401.1 + 120786 0.66 0.87647
Target:  5'- uGGCCuggaAGUGGGggGCGgaugggugaugucguUCCCa-CCGGc -3'
miRNA:   3'- gCCGG----UUACCCuuUGC---------------AGGGacGGCC- -5'
13262 5' -56.7 NC_003401.1 + 121438 0.66 0.858729
Target:  5'- uGGCgAuUGGG-GugGUCCCggugaGUCGGg -3'
miRNA:   3'- gCCGgUuACCCuUugCAGGGa----CGGCC- -5'
13262 5' -56.7 NC_003401.1 + 68888 0.66 0.858729
Target:  5'- uGGCCAAcGGGAagAugGUUCCUGaCa- -3'
miRNA:   3'- gCCGGUUaCCCU--UugCAGGGACgGcc -5'
13262 5' -56.7 NC_003401.1 + 10843 0.67 0.843053
Target:  5'- -cGCCuacGGcGAGGCGUCCgaGCUGGu -3'
miRNA:   3'- gcCGGuuaCC-CUUUGCAGGgaCGGCC- -5'
13262 5' -56.7 NC_003401.1 + 51558 0.69 0.748831
Target:  5'- -cGCCGGUGGGGGucuugaaacugaacCGUCCCcGCCGu -3'
miRNA:   3'- gcCGGUUACCCUUu-------------GCAGGGaCGGCc -5'
13262 5' -56.7 NC_003401.1 + 132472 0.69 0.735311
Target:  5'- cCGGCCGAcucccGGGAGCGcCCCgGuCCGGc -3'
miRNA:   3'- -GCCGGUUac---CCUUUGCaGGGaC-GGCC- -5'
13262 5' -56.7 NC_003401.1 + 47842 0.7 0.675709
Target:  5'- gGGCCGcgGGGAcggucCGUCCggGCCGu -3'
miRNA:   3'- gCCGGUuaCCCUuu---GCAGGgaCGGCc -5'
13262 5' -56.7 NC_003401.1 + 68935 0.7 0.655467
Target:  5'- aCGGCCGAgaaGAGGCG-CCCUGUCGu -3'
miRNA:   3'- -GCCGGUUaccCUUUGCaGGGACGGCc -5'
13262 5' -56.7 NC_003401.1 + 132205 0.76 0.371925
Target:  5'- gCGGCCGGgcccGGAGGCG-CCCgGCCGGc -3'
miRNA:   3'- -GCCGGUUac--CCUUUGCaGGGaCGGCC- -5'
13262 5' -56.7 NC_003401.1 + 103604 0.72 0.574385
Target:  5'- aGGCCAcgGUGGGAacaaguuuagAACGaCCCgcgGCCGa -3'
miRNA:   3'- gCCGGU--UACCCU----------UUGCaGGGa--CGGCc -5'
13262 5' -56.7 NC_003401.1 + 27880 0.71 0.584451
Target:  5'- gCGGUCGuUGGucGGCGUCCUgugcGCCGGa -3'
miRNA:   3'- -GCCGGUuACCcuUUGCAGGGa---CGGCC- -5'
13262 5' -56.7 NC_003401.1 + 120212 0.71 0.624985
Target:  5'- aCGGCCAGUGGGAAaACGcuagcaUCcgCCUGgUGGg -3'
miRNA:   3'- -GCCGGUUACCCUU-UGC------AG--GGACgGCC- -5'
13262 5' -56.7 NC_003401.1 + 39210 0.71 0.635151
Target:  5'- uGGCCGGUGacGggGCGUUCgCUGCCa- -3'
miRNA:   3'- gCCGGUUACc-CuuUGCAGG-GACGGcc -5'
13262 5' -56.7 NC_003401.1 + 107724 0.7 0.655467
Target:  5'- aGGCCAccGGGGcaacgcucggGGCGgCCgaGCCGGa -3'
miRNA:   3'- gCCGGUuaCCCU----------UUGCaGGgaCGGCC- -5'
13262 5' -56.7 NC_003401.1 + 58105 0.66 0.887614
Target:  5'- aGGCgGGUGGGAAgu-UUCCUGUaCGGg -3'
miRNA:   3'- gCCGgUUACCCUUugcAGGGACG-GCC- -5'
13262 5' -56.7 NC_003401.1 + 132515 0.71 0.614825
Target:  5'- gCGGCCGG-GGGcgGCGgccgcgggCCCggGCCGGc -3'
miRNA:   3'- -GCCGGUUaCCCuuUGCa-------GGGa-CGGCC- -5'
13262 5' -56.7 NC_003401.1 + 53348 0.7 0.675709
Target:  5'- gGGCgGAUucgGaGGAAGCGuccgccaacgcUCCCUGCUGGg -3'
miRNA:   3'- gCCGgUUA---C-CCUUUGC-----------AGGGACGGCC- -5'
13262 5' -56.7 NC_003401.1 + 118557 0.7 0.695811
Target:  5'- gCGGUCAAUGGGu--CGaaCCC-GCCGGc -3'
miRNA:   3'- -GCCGGUUACCCuuuGCa-GGGaCGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.