Results 21 - 38 of 38 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13262 | 5' | -56.7 | NC_003401.1 | + | 107268 | 0.67 | 0.850989 |
Target: 5'- cCGGCCGuccguucUGGGGAGCGUgUauugaaUGCgCGGg -3' miRNA: 3'- -GCCGGUu------ACCCUUUGCAgGg-----ACG-GCC- -5' |
|||||||
13262 | 5' | -56.7 | NC_003401.1 | + | 75179 | 0.66 | 0.858729 |
Target: 5'- aGGUCAAUGGu--GCGUCaCCUGUUaGGa -3' miRNA: 3'- gCCGGUUACCcuuUGCAG-GGACGG-CC- -5' |
|||||||
13262 | 5' | -56.7 | NC_003401.1 | + | 88224 | 0.66 | 0.858729 |
Target: 5'- uCGGUauAUGGGucACGUuccagccuUCCUGCUGGg -3' miRNA: 3'- -GCCGguUACCCuuUGCA--------GGGACGGCC- -5' |
|||||||
13262 | 5' | -56.7 | NC_003401.1 | + | 107800 | 0.66 | 0.880715 |
Target: 5'- aGGCuCGAUGGGccccGCG-CCCggugGCgCGGa -3' miRNA: 3'- gCCG-GUUACCCuu--UGCaGGGa---CG-GCC- -5' |
|||||||
13262 | 5' | -56.7 | NC_003401.1 | + | 92305 | 0.66 | 0.880715 |
Target: 5'- aGGCCGGgacgGGGAAucgccUGUUCCUuaCGGu -3' miRNA: 3'- gCCGGUUa---CCCUUu----GCAGGGAcgGCC- -5' |
|||||||
13262 | 5' | -56.7 | NC_003401.1 | + | 79949 | 0.67 | 0.81814 |
Target: 5'- gGGCgCGGUugcguugcccGGGGAACacgCCCUGCCGc -3' miRNA: 3'- gCCG-GUUA----------CCCUUUGca-GGGACGGCc -5' |
|||||||
13262 | 5' | -56.7 | NC_003401.1 | + | 89124 | 0.67 | 0.81814 |
Target: 5'- -aGCUGcUGGGugcCGUCCCUGCCa- -3' miRNA: 3'- gcCGGUuACCCuuuGCAGGGACGGcc -5' |
|||||||
13262 | 5' | -56.7 | NC_003401.1 | + | 91593 | 0.67 | 0.817283 |
Target: 5'- cCGcGCCAugggcacguacacGUcGGAGGCGUCCCUcGCCuGGc -3' miRNA: 3'- -GC-CGGU-------------UAcCCUUUGCAGGGA-CGG-CC- -5' |
|||||||
13262 | 5' | -56.7 | NC_003401.1 | + | 72611 | 0.71 | 0.604678 |
Target: 5'- gGGCaGAUGGaAGACG-CCCUcGCCGGa -3' miRNA: 3'- gCCGgUUACCcUUUGCaGGGA-CGGCC- -5' |
|||||||
13262 | 5' | -56.7 | NC_003401.1 | + | 132515 | 0.71 | 0.614825 |
Target: 5'- gCGGCCGG-GGGcgGCGgccgcgggCCCggGCCGGc -3' miRNA: 3'- -GCCGGUUaCCCuuUGCa-------GGGa-CGGCC- -5' |
|||||||
13262 | 5' | -56.7 | NC_003401.1 | + | 53348 | 0.7 | 0.675709 |
Target: 5'- gGGCgGAUucgGaGGAAGCGuccgccaacgcUCCCUGCUGGg -3' miRNA: 3'- gCCGgUUA---C-CCUUUGC-----------AGGGACGGCC- -5' |
|||||||
13262 | 5' | -56.7 | NC_003401.1 | + | 118557 | 0.7 | 0.695811 |
Target: 5'- gCGGUCAAUGGGu--CGaaCCC-GCCGGc -3' miRNA: 3'- -GCCGGUUACCCuuuGCa-GGGaCGGCC- -5' |
|||||||
13262 | 5' | -56.7 | NC_003401.1 | + | 23818 | 0.69 | 0.725546 |
Target: 5'- gCGGCguGgGGGAAagcGCGgcgccaCCUGCCGGc -3' miRNA: 3'- -GCCGguUaCCCUU---UGCag----GGACGGCC- -5' |
|||||||
13262 | 5' | -56.7 | NC_003401.1 | + | 14766 | 0.69 | 0.735311 |
Target: 5'- gGGCCugcuggaggauGUGGGuGACGUUaaUGCCGGc -3' miRNA: 3'- gCCGGu----------UACCCuUUGCAGggACGGCC- -5' |
|||||||
13262 | 5' | -56.7 | NC_003401.1 | + | 132675 | 0.69 | 0.744987 |
Target: 5'- gGGCCc--GGGggGCGUCggggcgcggcgCC-GCCGGg -3' miRNA: 3'- gCCGGuuaCCCuuUGCAG-----------GGaCGGCC- -5' |
|||||||
13262 | 5' | -56.7 | NC_003401.1 | + | 89866 | 0.69 | 0.744987 |
Target: 5'- gCGGCCugcguccAUGGGcuugagccagGGACGcCCCUGCCu- -3' miRNA: 3'- -GCCGGu------UACCC----------UUUGCaGGGACGGcc -5' |
|||||||
13262 | 5' | -56.7 | NC_003401.1 | + | 132639 | 0.68 | 0.754567 |
Target: 5'- uCGGCCGGaccGGGgcGC-UCCCgggagucgGCCGGg -3' miRNA: 3'- -GCCGGUUa--CCCuuUGcAGGGa-------CGGCC- -5' |
|||||||
13262 | 5' | -56.7 | NC_003401.1 | + | 58105 | 0.66 | 0.887614 |
Target: 5'- aGGCgGGUGGGAAgu-UUCCUGUaCGGg -3' miRNA: 3'- gCCGgUUACCCUUugcAGGGACG-GCC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home