miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13265 3' -57.1 NC_003401.1 + 118411 1.12 0.001262
Target:  5'- gACCCAUUGACCGCAUCCUCGGUGGCCg -3'
miRNA:   3'- -UGGGUAACUGGCGUAGGAGCCACCGG- -5'
13265 3' -57.1 NC_003401.1 + 94560 0.75 0.350877
Target:  5'- uGCCCAUUGAUCGU-UCCUCc-UGGCCg -3'
miRNA:   3'- -UGGGUAACUGGCGuAGGAGccACCGG- -5'
13265 3' -57.1 NC_003401.1 + 23986 0.74 0.399829
Target:  5'- cGCCCAUUGGCUGCcgCCagCGuccaaUGGCCg -3'
miRNA:   3'- -UGGGUAACUGGCGuaGGa-GCc----ACCGG- -5'
13265 3' -57.1 NC_003401.1 + 128030 0.73 0.480877
Target:  5'- cGCgCAccGGCaCGCcuGUCCUCGGUGGCUu -3'
miRNA:   3'- -UGgGUaaCUG-GCG--UAGGAGCCACCGG- -5'
13265 3' -57.1 NC_003401.1 + 79837 0.71 0.546058
Target:  5'- uACCUcuucaccggaggcgGUUGcgGuuGCAgacgCCUCGGUGGCCg -3'
miRNA:   3'- -UGGG--------------UAAC--UggCGUa---GGAGCCACCGG- -5'
13265 3' -57.1 NC_003401.1 + 116628 0.71 0.549049
Target:  5'- gGCgCGUUGGCCGUAUUCUUGGUGa-- -3'
miRNA:   3'- -UGgGUAACUGGCGUAGGAGCCACcgg -5'
13265 3' -57.1 NC_003401.1 + 133680 0.71 0.569114
Target:  5'- gGCCCGggucCCGUGUCCUCGucUGGCCc -3'
miRNA:   3'- -UGGGUaacuGGCGUAGGAGCc-ACCGG- -5'
13265 3' -57.1 NC_003401.1 + 965 0.71 0.569114
Target:  5'- gGCCCGggucCCGUGUCCUCGucUGGCCc -3'
miRNA:   3'- -UGGGUaacuGGCGUAGGAGCc-ACCGG- -5'
13265 3' -57.1 NC_003401.1 + 104685 0.71 0.579216
Target:  5'- cGCCCGgcGAUgGa---CUCGGUGGCCa -3'
miRNA:   3'- -UGGGUaaCUGgCguagGAGCCACCGG- -5'
13265 3' -57.1 NC_003401.1 + 126007 0.7 0.609722
Target:  5'- gACCCAcgGuGCCGCA-Ca-CGGUGGCCc -3'
miRNA:   3'- -UGGGUaaC-UGGCGUaGgaGCCACCGG- -5'
13265 3' -57.1 NC_003401.1 + 64099 0.7 0.630154
Target:  5'- cGCgCCAcUGACCGCGU--UUGGUGGUCc -3'
miRNA:   3'- -UG-GGUaACUGGCGUAggAGCCACCGG- -5'
13265 3' -57.1 NC_003401.1 + 118019 0.7 0.650593
Target:  5'- uACCCAUcGGCCGC-UCUUUGGcgccggGGUCg -3'
miRNA:   3'- -UGGGUAaCUGGCGuAGGAGCCa-----CCGG- -5'
13265 3' -57.1 NC_003401.1 + 121825 0.7 0.650593
Target:  5'- gACCCuugggaUGACC-CGUgCCuggauUCGGUGGCCg -3'
miRNA:   3'- -UGGGua----ACUGGcGUA-GG-----AGCCACCGG- -5'
13265 3' -57.1 NC_003401.1 + 105842 0.69 0.659775
Target:  5'- aGCCCGUgggcUGuCCGUacucguacggcggGUgCUCGGUGGUCg -3'
miRNA:   3'- -UGGGUA----ACuGGCG-------------UAgGAGCCACCGG- -5'
13265 3' -57.1 NC_003401.1 + 119897 0.69 0.691226
Target:  5'- aACCCucgcGGCCGCcgCCgagUCGGUuGCCa -3'
miRNA:   3'- -UGGGuaa-CUGGCGuaGG---AGCCAcCGG- -5'
13265 3' -57.1 NC_003401.1 + 69827 0.69 0.701283
Target:  5'- cGCCCuucagucuuUUGuCUGCcacGUCCUCGcGUGGCUg -3'
miRNA:   3'- -UGGGu--------AACuGGCG---UAGGAGC-CACCGG- -5'
13265 3' -57.1 NC_003401.1 + 19801 0.69 0.711282
Target:  5'- cGCCCGgcagcuccagGGCgCGCGa--UCGGUGGCCg -3'
miRNA:   3'- -UGGGUaa--------CUG-GCGUaggAGCCACCGG- -5'
13265 3' -57.1 NC_003401.1 + 97514 0.68 0.73107
Target:  5'- uGCCUGUUGACguuucUGCG-CUUUGGUGGUCu -3'
miRNA:   3'- -UGGGUAACUG-----GCGUaGGAGCCACCGG- -5'
13265 3' -57.1 NC_003401.1 + 16316 0.68 0.73107
Target:  5'- aACCCGUaaACCGCGUuacaugucaCCUUGaUGGCCa -3'
miRNA:   3'- -UGGGUAacUGGCGUA---------GGAGCcACCGG- -5'
13265 3' -57.1 NC_003401.1 + 64304 0.68 0.740841
Target:  5'- cCCCGggaaucGGCaGCAUCCUgGGagUGGCCg -3'
miRNA:   3'- uGGGUaa----CUGgCGUAGGAgCC--ACCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.