Results 1 - 20 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13265 | 3' | -57.1 | NC_003401.1 | + | 965 | 0.71 | 0.569114 |
Target: 5'- gGCCCGggucCCGUGUCCUCGucUGGCCc -3' miRNA: 3'- -UGGGUaacuGGCGUAGGAGCc-ACCGG- -5' |
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13265 | 3' | -57.1 | NC_003401.1 | + | 7973 | 0.66 | 0.823426 |
Target: 5'- aAUCCGgcGAUgGCAUCCUCcccuccgaGUGGCUa -3' miRNA: 3'- -UGGGUaaCUGgCGUAGGAGc-------CACCGG- -5' |
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13265 | 3' | -57.1 | NC_003401.1 | + | 11913 | 0.67 | 0.797156 |
Target: 5'- uGCCUucuugGugCGUcuuGUCCUCGGUGcCCg -3' miRNA: 3'- -UGGGuaa--CugGCG---UAGGAGCCACcGG- -5' |
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13265 | 3' | -57.1 | NC_003401.1 | + | 16316 | 0.68 | 0.73107 |
Target: 5'- aACCCGUaaACCGCGUuacaugucaCCUUGaUGGCCa -3' miRNA: 3'- -UGGGUAacUGGCGUA---------GGAGCcACCGG- -5' |
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13265 | 3' | -57.1 | NC_003401.1 | + | 19801 | 0.69 | 0.711282 |
Target: 5'- cGCCCGgcagcuccagGGCgCGCGa--UCGGUGGCCg -3' miRNA: 3'- -UGGGUaa--------CUG-GCGUaggAGCCACCGG- -5' |
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13265 | 3' | -57.1 | NC_003401.1 | + | 23986 | 0.74 | 0.399829 |
Target: 5'- cGCCCAUUGGCUGCcgCCagCGuccaaUGGCCg -3' miRNA: 3'- -UGGGUAACUGGCGuaGGa-GCc----ACCGG- -5' |
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13265 | 3' | -57.1 | NC_003401.1 | + | 64099 | 0.7 | 0.630154 |
Target: 5'- cGCgCCAcUGACCGCGU--UUGGUGGUCc -3' miRNA: 3'- -UG-GGUaACUGGCGUAggAGCCACCGG- -5' |
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13265 | 3' | -57.1 | NC_003401.1 | + | 64304 | 0.68 | 0.740841 |
Target: 5'- cCCCGggaaucGGCaGCAUCCUgGGagUGGCCg -3' miRNA: 3'- uGGGUaa----CUGgCGUAGGAgCC--ACCGG- -5' |
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13265 | 3' | -57.1 | NC_003401.1 | + | 69827 | 0.69 | 0.701283 |
Target: 5'- cGCCCuucagucuuUUGuCUGCcacGUCCUCGcGUGGCUg -3' miRNA: 3'- -UGGGu--------AACuGGCG---UAGGAGC-CACCGG- -5' |
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13265 | 3' | -57.1 | NC_003401.1 | + | 76974 | 0.68 | 0.763887 |
Target: 5'- aGCCCucguuuucgucagUGAUCGCGUacaCCa-GGUGGCCg -3' miRNA: 3'- -UGGGua-----------ACUGGCGUA---GGagCCACCGG- -5' |
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13265 | 3' | -57.1 | NC_003401.1 | + | 79837 | 0.71 | 0.546058 |
Target: 5'- uACCUcuucaccggaggcgGUUGcgGuuGCAgacgCCUCGGUGGCCg -3' miRNA: 3'- -UGGG--------------UAAC--UggCGUa---GGAGCCACCGG- -5' |
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13265 | 3' | -57.1 | NC_003401.1 | + | 81368 | 0.66 | 0.823426 |
Target: 5'- -aCCAUgu-CC-CGUCCUCGcUGGCCa -3' miRNA: 3'- ugGGUAacuGGcGUAGGAGCcACCGG- -5' |
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13265 | 3' | -57.1 | NC_003401.1 | + | 94560 | 0.75 | 0.350877 |
Target: 5'- uGCCCAUUGAUCGU-UCCUCc-UGGCCg -3' miRNA: 3'- -UGGGUAACUGGCGuAGGAGccACCGG- -5' |
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13265 | 3' | -57.1 | NC_003401.1 | + | 97514 | 0.68 | 0.73107 |
Target: 5'- uGCCUGUUGACguuucUGCG-CUUUGGUGGUCu -3' miRNA: 3'- -UGGGUAACUG-----GCGUaGGAGCCACCGG- -5' |
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13265 | 3' | -57.1 | NC_003401.1 | + | 104685 | 0.71 | 0.579216 |
Target: 5'- cGCCCGgcGAUgGa---CUCGGUGGCCa -3' miRNA: 3'- -UGGGUaaCUGgCguagGAGCCACCGG- -5' |
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13265 | 3' | -57.1 | NC_003401.1 | + | 105842 | 0.69 | 0.659775 |
Target: 5'- aGCCCGUgggcUGuCCGUacucguacggcggGUgCUCGGUGGUCg -3' miRNA: 3'- -UGGGUA----ACuGGCG-------------UAgGAGCCACCGG- -5' |
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13265 | 3' | -57.1 | NC_003401.1 | + | 106047 | 0.66 | 0.823426 |
Target: 5'- cGCCCGgucgucGAcuCCGCcgCUUCuGGUGGUCa -3' miRNA: 3'- -UGGGUaa----CU--GGCGuaGGAG-CCACCGG- -5' |
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13265 | 3' | -57.1 | NC_003401.1 | + | 116628 | 0.71 | 0.549049 |
Target: 5'- gGCgCGUUGGCCGUAUUCUUGGUGa-- -3' miRNA: 3'- -UGgGUAACUGGCGUAGGAGCCACcgg -5' |
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13265 | 3' | -57.1 | NC_003401.1 | + | 118019 | 0.7 | 0.650593 |
Target: 5'- uACCCAUcGGCCGC-UCUUUGGcgccggGGUCg -3' miRNA: 3'- -UGGGUAaCUGGCGuAGGAGCCa-----CCGG- -5' |
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13265 | 3' | -57.1 | NC_003401.1 | + | 118411 | 1.12 | 0.001262 |
Target: 5'- gACCCAUUGACCGCAUCCUCGGUGGCCg -3' miRNA: 3'- -UGGGUAACUGGCGUAGGAGCCACCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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